miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31169 3' -54.8 NC_006560.1 + 32682 0.66 0.936824
Target:  5'- -gGCCCAgagGGCCGgGgCCggggGCUCCGCc -3'
miRNA:   3'- agUGGGUau-UCGGUgUgGG----UGAGGUG- -5'
31169 3' -54.8 NC_006560.1 + 144253 0.66 0.936824
Target:  5'- -uGCCCG--GGCC-CGCCCGCgUgCGCg -3'
miRNA:   3'- agUGGGUauUCGGuGUGGGUG-AgGUG- -5'
31169 3' -54.8 NC_006560.1 + 131310 0.66 0.936824
Target:  5'- -gGCCCGgcuGGCCGCGgCCCugUgCGg -3'
miRNA:   3'- agUGGGUau-UCGGUGU-GGGugAgGUg -5'
31169 3' -54.8 NC_006560.1 + 80198 0.66 0.936824
Target:  5'- gCACCCucgcgcgAAGCCccCGCCCcaUCCACc -3'
miRNA:   3'- aGUGGGua-----UUCGGu-GUGGGugAGGUG- -5'
31169 3' -54.8 NC_006560.1 + 142070 0.66 0.936824
Target:  5'- gCACCCcgAGGCCGgGCggGCggggCCGCg -3'
miRNA:   3'- aGUGGGuaUUCGGUgUGggUGa---GGUG- -5'
31169 3' -54.8 NC_006560.1 + 67929 0.66 0.936824
Target:  5'- cCACCCcgGAGgagacCCGCGCCgCACcaCCGCc -3'
miRNA:   3'- aGUGGGuaUUC-----GGUGUGG-GUGa-GGUG- -5'
31169 3' -54.8 NC_006560.1 + 69842 0.66 0.936824
Target:  5'- aCGCCCugcGGGCCACGUgCGCgCCGCc -3'
miRNA:   3'- aGUGGGua-UUCGGUGUGgGUGaGGUG- -5'
31169 3' -54.8 NC_006560.1 + 123063 0.66 0.936824
Target:  5'- gCACCCccugGUGaucccGGCCcucgGCGCCCGCUUCGu -3'
miRNA:   3'- aGUGGG----UAU-----UCGG----UGUGGGUGAGGUg -5'
31169 3' -54.8 NC_006560.1 + 36133 0.66 0.936824
Target:  5'- cCGCCgGggucGAGCCGgGCCCGC-CgGCg -3'
miRNA:   3'- aGUGGgUa---UUCGGUgUGGGUGaGgUG- -5'
31169 3' -54.8 NC_006560.1 + 70432 0.66 0.936824
Target:  5'- gCGCCCucacGGCCGCccuggcggGCCUGCgggCCGCg -3'
miRNA:   3'- aGUGGGuau-UCGGUG--------UGGGUGa--GGUG- -5'
31169 3' -54.8 NC_006560.1 + 33353 0.66 0.936824
Target:  5'- -gGCCCcgcGGCCgucucGCGCCCGCggcggggCCGCg -3'
miRNA:   3'- agUGGGuauUCGG-----UGUGGGUGa------GGUG- -5'
31169 3' -54.8 NC_006560.1 + 117833 0.66 0.936824
Target:  5'- cCGCCCugcgcGUGAGCUggGgGCCCACggCCAg -3'
miRNA:   3'- aGUGGG-----UAUUCGG--UgUGGGUGa-GGUg -5'
31169 3' -54.8 NC_006560.1 + 103943 0.66 0.935831
Target:  5'- aUCGCCCGgaucuucgauGCCcaACACCgACUCgACc -3'
miRNA:   3'- -AGUGGGUauu-------CGG--UGUGGgUGAGgUG- -5'
31169 3' -54.8 NC_006560.1 + 102363 0.66 0.934828
Target:  5'- cUCGCCCggcccccccgcggcGgcGGCCGCGCCCGggaggccCUCgGCg -3'
miRNA:   3'- -AGUGGG--------------UauUCGGUGUGGGU-------GAGgUG- -5'
31169 3' -54.8 NC_006560.1 + 47452 0.66 0.931758
Target:  5'- -gGCCgCGUGgcGGCCACGCaCGC-CCGCa -3'
miRNA:   3'- agUGG-GUAU--UCGGUGUGgGUGaGGUG- -5'
31169 3' -54.8 NC_006560.1 + 132021 0.66 0.931758
Target:  5'- -gACCCcgGAGaCACGCCCccgGCcgCCGCg -3'
miRNA:   3'- agUGGGuaUUCgGUGUGGG---UGa-GGUG- -5'
31169 3' -54.8 NC_006560.1 + 73527 0.66 0.931758
Target:  5'- uUCGCCCcc--GCCACcccgACCCACcCCGa -3'
miRNA:   3'- -AGUGGGuauuCGGUG----UGGGUGaGGUg -5'
31169 3' -54.8 NC_006560.1 + 72865 0.66 0.931758
Target:  5'- aCGCCaccGAGcCCGCGCCCgACgacgCCACc -3'
miRNA:   3'- aGUGGguaUUC-GGUGUGGG-UGa---GGUG- -5'
31169 3' -54.8 NC_006560.1 + 37209 0.66 0.931758
Target:  5'- cCGCC---GGGCCGCGCUC-UUCCGCg -3'
miRNA:   3'- aGUGGguaUUCGGUGUGGGuGAGGUG- -5'
31169 3' -54.8 NC_006560.1 + 98383 0.66 0.931758
Target:  5'- aC-CCCAUGaaGGCCcugUACCCGCUgaCCACc -3'
miRNA:   3'- aGuGGGUAU--UCGGu--GUGGGUGA--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.