miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31169 5' -61 NC_006560.1 + 10288 0.66 0.717934
Target:  5'- uCCGCGaGAgGGGGCgGGCCgccggggacCGCCg -3'
miRNA:   3'- -GGCGCcCUaCCUCGaCCGGau-------GCGGa -5'
31169 5' -61 NC_006560.1 + 146906 0.66 0.717934
Target:  5'- gCCGCcuGGGcccGGGCUugacuccgGGCCUGCGUCUg -3'
miRNA:   3'- -GGCG--CCCuacCUCGA--------CCGGAUGCGGA- -5'
31169 5' -61 NC_006560.1 + 12710 0.66 0.708302
Target:  5'- uCgGCGGGGgugGGGGCggGGCCcuggauggugACGUCg -3'
miRNA:   3'- -GgCGCCCUa--CCUCGa-CCGGa---------UGCGGa -5'
31169 5' -61 NC_006560.1 + 14252 0.66 0.708302
Target:  5'- cCCGCGGcGGUGGAugucGCguugGcGCCggcgGCGUCg -3'
miRNA:   3'- -GGCGCC-CUACCU----CGa---C-CGGa---UGCGGa -5'
31169 5' -61 NC_006560.1 + 111983 0.66 0.708302
Target:  5'- aCGCGGG--GGAcCUGGUCcccGCGCCg -3'
miRNA:   3'- gGCGCCCuaCCUcGACCGGa--UGCGGa -5'
31169 5' -61 NC_006560.1 + 48095 0.66 0.702493
Target:  5'- aCCGgGGGcgcGGAGCUucccgacgccgcgacGGCCccgaggccgUACGCCa -3'
miRNA:   3'- -GGCgCCCua-CCUCGA---------------CCGG---------AUGCGGa -5'
31169 5' -61 NC_006560.1 + 97012 0.66 0.698609
Target:  5'- aCCGUGGGcUGGGaCUGGgCCcccaaGCGCCc -3'
miRNA:   3'- -GGCGCCCuACCUcGACC-GGa----UGCGGa -5'
31169 5' -61 NC_006560.1 + 68811 0.66 0.698609
Target:  5'- aCCGCGGGAucgUGGcGCc--CCcGCGCCUg -3'
miRNA:   3'- -GGCGCCCU---ACCuCGaccGGaUGCGGA- -5'
31169 5' -61 NC_006560.1 + 130604 0.66 0.698609
Target:  5'- gCCGCGcGGccGGccgcgcGGCUGGCgUGgGCCc -3'
miRNA:   3'- -GGCGC-CCuaCC------UCGACCGgAUgCGGa -5'
31169 5' -61 NC_006560.1 + 3383 0.66 0.696664
Target:  5'- -gGCGGGcgGGcGCgGGCCggcucuucuugcGCGCCg -3'
miRNA:   3'- ggCGCCCuaCCuCGaCCGGa-----------UGCGGa -5'
31169 5' -61 NC_006560.1 + 76129 0.66 0.688864
Target:  5'- gCGuCGGGGcgcUGGAGCgcgUGGaCCagACGCCg -3'
miRNA:   3'- gGC-GCCCU---ACCUCG---ACC-GGa-UGCGGa -5'
31169 5' -61 NC_006560.1 + 12791 0.66 0.688864
Target:  5'- aCCGCGGGGagGGAcccGUcGGCCggGgGCCg -3'
miRNA:   3'- -GGCGCCCUa-CCU---CGaCCGGa-UgCGGa -5'
31169 5' -61 NC_006560.1 + 55693 0.66 0.679075
Target:  5'- uUGCGGGcgGGcGCcaGGCCcgcccGCGCCUc -3'
miRNA:   3'- gGCGCCCuaCCuCGa-CCGGa----UGCGGA- -5'
31169 5' -61 NC_006560.1 + 118645 0.66 0.679075
Target:  5'- uCgGUGGcGUGGGGC-GGCCgcaACGCCc -3'
miRNA:   3'- -GgCGCCcUACCUCGaCCGGa--UGCGGa -5'
31169 5' -61 NC_006560.1 + 36684 0.66 0.679075
Target:  5'- uCgGUaacuGGAUGGuGCUGGCCUACGa-- -3'
miRNA:   3'- -GgCGc---CCUACCuCGACCGGAUGCgga -5'
31169 5' -61 NC_006560.1 + 142180 0.66 0.679075
Target:  5'- gCGCGGGcccuaAUGGgaGGCgcGGCCUccgggcggcGCGCCa -3'
miRNA:   3'- gGCGCCC-----UACC--UCGa-CCGGA---------UGCGGa -5'
31169 5' -61 NC_006560.1 + 146490 0.66 0.679075
Target:  5'- gCCGCGagcggaggugccGGggGGAGCUGcGCCgggcGgGCCg -3'
miRNA:   3'- -GGCGC------------CCuaCCUCGAC-CGGa---UgCGGa -5'
31169 5' -61 NC_006560.1 + 16533 0.66 0.679075
Target:  5'- uCCGCGGcGcUGGGGC--GCCgcGCGCCa -3'
miRNA:   3'- -GGCGCC-CuACCUCGacCGGa-UGCGGa -5'
31169 5' -61 NC_006560.1 + 57164 0.66 0.678094
Target:  5'- aCGCGGGGUGGGcgcguccgaacucGgaGGCgaGCGCg- -3'
miRNA:   3'- gGCGCCCUACCU-------------CgaCCGgaUGCGga -5'
31169 5' -61 NC_006560.1 + 54652 0.66 0.677113
Target:  5'- gCGCGGGAUgagggucgcgGGGGCgcggcagccgccGGCC-GCGCCc -3'
miRNA:   3'- gGCGCCCUA----------CCUCGa-----------CCGGaUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.