miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3117 5' -62.8 NC_001493.1 + 124213 0.66 0.576284
Target:  5'- aGGGGUgcggacacggaCGGGCCaCGcGCCGUcgUGCCGa -3'
miRNA:   3'- -UCCCG-----------GCCCGG-GC-CGGUAuaGUGGUg -5'
3117 5' -62.8 NC_001493.1 + 8659 0.66 0.576284
Target:  5'- aGGGGUgcggacacggaCGGGCCaCGcGCCGUcgUGCCGa -3'
miRNA:   3'- -UCCCG-----------GCCCGG-GC-CGGUAuaGUGGUg -5'
3117 5' -62.8 NC_001493.1 + 54768 0.66 0.576284
Target:  5'- uGGGCgGGGCCCGuucCCGgguacGUgAUCACg -3'
miRNA:   3'- uCCCGgCCCGGGCc--GGUa----UAgUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 129881 0.66 0.566472
Target:  5'- gAGGGCCaGGGUCacgaGGUCG--UCACC-Cg -3'
miRNA:   3'- -UCCCGG-CCCGGg---CCGGUauAGUGGuG- -5'
3117 5' -62.8 NC_001493.1 + 14327 0.66 0.566472
Target:  5'- gAGGGCCaGGGUCacgaGGUCG--UCACC-Cg -3'
miRNA:   3'- -UCCCGG-CCCGGg---CCGGUauAGUGGuG- -5'
3117 5' -62.8 NC_001493.1 + 64723 0.66 0.556703
Target:  5'- uGGGUCGGGUCCGuuCAUcgCgACCGg -3'
miRNA:   3'- uCCCGGCCCGGGCcgGUAuaG-UGGUg -5'
3117 5' -62.8 NC_001493.1 + 53581 0.66 0.555729
Target:  5'- cGGGaCCGaGGCCgaacuccgugcgaUGGUCGggAUCGCCACc -3'
miRNA:   3'- uCCC-GGC-CCGG-------------GCCGGUa-UAGUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 106314 0.66 0.537318
Target:  5'- -aGGUCGGGUaCCGGUU---UCACCGCg -3'
miRNA:   3'- ucCCGGCCCG-GGCCGGuauAGUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 23631 0.66 0.537318
Target:  5'- uGGGGCCGGGUcucugcggucaUCGGCgGUGUgACgGu -3'
miRNA:   3'- -UCCCGGCCCG-----------GGCCGgUAUAgUGgUg -5'
3117 5' -62.8 NC_001493.1 + 8060 0.66 0.531547
Target:  5'- cGGGGUgCGGGCUCGGUCucgcucagggugguUGUcCACUACg -3'
miRNA:   3'- -UCCCG-GCCCGGGCCGGu-------------AUA-GUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 123615 0.66 0.531547
Target:  5'- cGGGGUgCGGGCUCGGUCucgcucagggugguUGUcCACUACg -3'
miRNA:   3'- -UCCCG-GCCCGGGCCGGu-------------AUA-GUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 58881 0.67 0.508699
Target:  5'- uAGGGCCcauguguuacGGUCCguuGGCCGaacaggugugUGUCACCGCg -3'
miRNA:   3'- -UCCCGGc---------CCGGG---CCGGU----------AUAGUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 120260 0.67 0.499301
Target:  5'- gGGGGCC-GGCagCGGCgGggGUCACCGa -3'
miRNA:   3'- -UCCCGGcCCGg-GCCGgUa-UAGUGGUg -5'
3117 5' -62.8 NC_001493.1 + 118811 0.67 0.499301
Target:  5'- gAGGaaCCGGGCaCCGGCCGUGacgaGCC-Cg -3'
miRNA:   3'- -UCCc-GGCCCG-GGCCGGUAUag--UGGuG- -5'
3117 5' -62.8 NC_001493.1 + 3257 0.67 0.499301
Target:  5'- gAGGaaCCGGGCaCCGGCCGUGacgaGCC-Cg -3'
miRNA:   3'- -UCCc-GGCCCG-GGCCGGUAUag--UGGuG- -5'
3117 5' -62.8 NC_001493.1 + 79762 0.67 0.498366
Target:  5'- cGGGGaCUGGcgguucaaggcgaGCCC--CCAUGUCACCACg -3'
miRNA:   3'- -UCCC-GGCC-------------CGGGccGGUAUAGUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 106971 0.67 0.480743
Target:  5'- --cGCCGGGCaugacaCGGCCGUGUugCACCuuGCa -3'
miRNA:   3'- uccCGGCCCGg-----GCCGGUAUA--GUGG--UG- -5'
3117 5' -62.8 NC_001493.1 + 8282 0.67 0.462527
Target:  5'- uGGGUgGGaGcCCCGGCgCGg--CGCCACa -3'
miRNA:   3'- uCCCGgCC-C-GGGCCG-GUauaGUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 123836 0.67 0.462527
Target:  5'- uGGGUgGGaGcCCCGGCgCGg--CGCCACa -3'
miRNA:   3'- uCCCGgCC-C-GGGCCG-GUauaGUGGUG- -5'
3117 5' -62.8 NC_001493.1 + 34223 0.67 0.462527
Target:  5'- gAGGGCCGcGGUgCCGGCCGcguugAUCugaCGCc -3'
miRNA:   3'- -UCCCGGC-CCG-GGCCGGUa----UAGug-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.