miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31171 3' -55.8 NC_006560.1 + 101617 0.66 0.925809
Target:  5'- aACCgcgagcgcgGU-GAUGGUGUUUG-CGGUGGCc -3'
miRNA:   3'- -UGGa--------CAcCUGCCAUAAGCaGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 125039 0.66 0.920364
Target:  5'- gGCUgGUGGcGCGGcggUCGcCGGCGGa -3'
miRNA:   3'- -UGGaCACC-UGCCauaAGCaGCCGCCg -5'
31171 3' -55.8 NC_006560.1 + 3576 0.66 0.920364
Target:  5'- cACCUGccgcgGGcuGCGGgccagcagCGgcgCGGCGGCg -3'
miRNA:   3'- -UGGACa----CC--UGCCauaa----GCa--GCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 144121 0.66 0.920364
Target:  5'- uGCCUGgcuccGGCGGc---CG-CGGCGGCg -3'
miRNA:   3'- -UGGACac---CUGCCauaaGCaGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 3870 0.66 0.920364
Target:  5'- gACCgccaGGcacuccGCGGcgg-CGUCGGCGGCg -3'
miRNA:   3'- -UGGaca-CC------UGCCauaaGCAGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 85533 0.66 0.920364
Target:  5'- cGCUUGggggGGGCGGgggcgccCGUgGGgGGCg -3'
miRNA:   3'- -UGGACa---CCUGCCauaa---GCAgCCgCCG- -5'
31171 3' -55.8 NC_006560.1 + 10235 0.66 0.916983
Target:  5'- ---gGUGGGCGGcgggggcgcgggUCG-CGGCGGCc -3'
miRNA:   3'- uggaCACCUGCCaua---------AGCaGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 45594 0.66 0.914683
Target:  5'- cGCUUGUGGACGacgaugUCGaugcccgcguccUCGGCGcGCu -3'
miRNA:   3'- -UGGACACCUGCcaua--AGC------------AGCCGC-CG- -5'
31171 3' -55.8 NC_006560.1 + 2323 0.66 0.914683
Target:  5'- cGCCUcGcGcGCGGgcga-GUCGGCGGCg -3'
miRNA:   3'- -UGGA-CaCcUGCCauaagCAGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 28206 0.66 0.914683
Target:  5'- gGCCc--GGGCGGggagCGUCGGCccgGGCc -3'
miRNA:   3'- -UGGacaCCUGCCauaaGCAGCCG---CCG- -5'
31171 3' -55.8 NC_006560.1 + 43292 0.66 0.908768
Target:  5'- cGCCgGUcucGCGGa---CGUCGGCGGCg -3'
miRNA:   3'- -UGGaCAcc-UGCCauaaGCAGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 89021 0.66 0.908768
Target:  5'- gUCUGUGGGCGGggcgCGUCccCGGUc -3'
miRNA:   3'- uGGACACCUGCCauaaGCAGccGCCG- -5'
31171 3' -55.8 NC_006560.1 + 132241 0.66 0.908768
Target:  5'- cCCUGgcgGGGCuGUGgggCGaggaCGGCGGCu -3'
miRNA:   3'- uGGACa--CCUGcCAUaa-GCa---GCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 16 0.67 0.902622
Target:  5'- cCCggcgGGGCGGU-----UCGGCGGCg -3'
miRNA:   3'- uGGaca-CCUGCCAuaagcAGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 150345 0.67 0.902622
Target:  5'- cCCggcgGGGCGGU-----UCGGCGGCg -3'
miRNA:   3'- uGGaca-CCUGCCAuaagcAGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 12729 0.67 0.902622
Target:  5'- gGCCc-UGGAUGGUGacgUCGUCGGCcuccGGg -3'
miRNA:   3'- -UGGacACCUGCCAUa--AGCAGCCG----CCg -5'
31171 3' -55.8 NC_006560.1 + 93658 0.67 0.902622
Target:  5'- cGCCgc-GGcuuCGGcuccggCGUCGGCGGCg -3'
miRNA:   3'- -UGGacaCCu--GCCauaa--GCAGCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 58578 0.67 0.900099
Target:  5'- -gCUGUGGAgaacgccCGGUcuagGUUCGUgccgcagaucgucuUGGCGGCc -3'
miRNA:   3'- ugGACACCU-------GCCA----UAAGCA--------------GCCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 148447 0.67 0.889642
Target:  5'- aACCc--GGGCGGgccgacggUCGUCuggGGCGGCg -3'
miRNA:   3'- -UGGacaCCUGCCaua-----AGCAG---CCGCCG- -5'
31171 3' -55.8 NC_006560.1 + 2369 0.67 0.889642
Target:  5'- aGCacgGcGcGGCGGUAcUCGcgCGGCGGCa -3'
miRNA:   3'- -UGga-CaC-CUGCCAUaAGCa-GCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.