miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31171 5' -65 NC_006560.1 + 22259 0.66 0.556582
Target:  5'- gUGGGUcaucgacGCcGCGcC-CCCGCCGACcccgGGCg -3'
miRNA:   3'- -ACCCG-------CGcCGCaGaGGGCGGCUG----CCG- -5'
31171 5' -65 NC_006560.1 + 96281 0.66 0.5519
Target:  5'- cGGGa-CGGCGacgcgaccuucuacgUCUgCCCGCCGccgacCGGCg -3'
miRNA:   3'- aCCCgcGCCGC---------------AGA-GGGCGGCu----GCCG- -5'
31171 5' -65 NC_006560.1 + 144134 0.66 0.548163
Target:  5'- cGGcCGCGGCGgcgCcCCC-CCGGCucGGCa -3'
miRNA:   3'- aCCcGCGCCGCa--GaGGGcGGCUG--CCG- -5'
31171 5' -65 NC_006560.1 + 86643 0.66 0.548163
Target:  5'- cGcGGCcCGGC-UCcaggCCCGCC-ACGGCg -3'
miRNA:   3'- aC-CCGcGCCGcAGa---GGGCGGcUGCCG- -5'
31171 5' -65 NC_006560.1 + 127663 0.66 0.548163
Target:  5'- cGGGC-CGGUcuuGUUUCCCgacgcgggcgcGCCGACGucGCg -3'
miRNA:   3'- aCCCGcGCCG---CAGAGGG-----------CGGCUGC--CG- -5'
31171 5' -65 NC_006560.1 + 39031 0.66 0.548163
Target:  5'- gGGGcCGCGaacuGCG--UCCCGCCGAaggGGUg -3'
miRNA:   3'- aCCC-GCGC----CGCagAGGGCGGCUg--CCG- -5'
31171 5' -65 NC_006560.1 + 103868 0.66 0.548163
Target:  5'- cUGGGCaagagcgaCGGgGUCgaguacgugCCCgaGCCGAUGGCc -3'
miRNA:   3'- -ACCCGc-------GCCgCAGa--------GGG--CGGCUGCCG- -5'
31171 5' -65 NC_006560.1 + 133478 0.66 0.548163
Target:  5'- gGGGCGUccGGCGUCUacgggcgaGCgCGAgCGGCc -3'
miRNA:   3'- aCCCGCG--CCGCAGAggg-----CG-GCU-GCCG- -5'
31171 5' -65 NC_006560.1 + 23949 0.66 0.548163
Target:  5'- cGcGGCGCccGCGcCcgccgcccgCCCGCCGGCGcGCa -3'
miRNA:   3'- aC-CCGCGc-CGCaGa--------GGGCGGCUGC-CG- -5'
31171 5' -65 NC_006560.1 + 42934 0.66 0.548163
Target:  5'- cGGuaGCGCGGCGccggCUCCaGCCccgcGGgGGCg -3'
miRNA:   3'- aCC--CGCGCCGCa---GAGGgCGG----CUgCCG- -5'
31171 5' -65 NC_006560.1 + 114032 0.66 0.548163
Target:  5'- cUGGGCGUGGgGUacacggCgGCCGuggccACGGCg -3'
miRNA:   3'- -ACCCGCGCCgCAgag---GgCGGC-----UGCCG- -5'
31171 5' -65 NC_006560.1 + 147289 0.66 0.548163
Target:  5'- cGGGCGgGGgG-CUCUgGCgGGCgccgGGCg -3'
miRNA:   3'- aCCCGCgCCgCaGAGGgCGgCUG----CCG- -5'
31171 5' -65 NC_006560.1 + 57397 0.66 0.54723
Target:  5'- aGGGcCGCGGCcagcgCggCCGCCccggcgaccucggGGCGGCa -3'
miRNA:   3'- aCCC-GCGCCGca---GagGGCGG-------------CUGCCG- -5'
31171 5' -65 NC_006560.1 + 117944 0.66 0.54723
Target:  5'- -uGGCGCGGCuGUgccgccaCUUCUGCCGGuacgugUGGCg -3'
miRNA:   3'- acCCGCGCCG-CA-------GAGGGCGGCU------GCCG- -5'
31171 5' -65 NC_006560.1 + 130550 0.66 0.546297
Target:  5'- cUGGGCGUGGacgcgcagGUCgccacggaccccCUCGCCcuGGCGGCg -3'
miRNA:   3'- -ACCCGCGCCg-------CAGa-----------GGGCGG--CUGCCG- -5'
31171 5' -65 NC_006560.1 + 85497 0.66 0.546297
Target:  5'- uUGGGCuCGGgGUCgccgggcugcugCCCGCgGG-GGCg -3'
miRNA:   3'- -ACCCGcGCCgCAGa-----------GGGCGgCUgCCG- -5'
31171 5' -65 NC_006560.1 + 149440 0.66 0.538856
Target:  5'- cGGGCGCacaGCGagCUCCggagaucccauCGCaGGCGGCa -3'
miRNA:   3'- aCCCGCGc--CGCa-GAGG-----------GCGgCUGCCG- -5'
31171 5' -65 NC_006560.1 + 11651 0.66 0.538856
Target:  5'- cGGGCG-GGCGggggagucgCUUCCGggggcUCGGCGGUc -3'
miRNA:   3'- aCCCGCgCCGCa--------GAGGGC-----GGCUGCCG- -5'
31171 5' -65 NC_006560.1 + 10485 0.66 0.538856
Target:  5'- gGGGCccGgGGCGggggC-CCCGUCGGguCGGCc -3'
miRNA:   3'- aCCCG--CgCCGCa---GaGGGCGGCU--GCCG- -5'
31171 5' -65 NC_006560.1 + 27930 0.66 0.538856
Target:  5'- -aGGCGUGGCGcCUCgCGCCccCGcGCc -3'
miRNA:   3'- acCCGCGCCGCaGAGgGCGGcuGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.