miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31173 3' -56.6 NC_006560.1 + 44686 0.66 0.913604
Target:  5'- cCGUCGGGGccgcggacaagucGGCCGACGugcucgucgcccAGGccauccgcagcauggCGGAGAg -3'
miRNA:   3'- -GCAGUCCU-------------UCGGCUGC------------UCCa--------------GCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 33413 0.66 0.913604
Target:  5'- gCGggCGGGGAgcGCCGGCGggAGGagGGGGGu -3'
miRNA:   3'- -GCa-GUCCUU--CGGCUGC--UCCagCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 42477 0.66 0.913604
Target:  5'- cCGUCGGGGcGGUCGAgGGGGcggucaCGGGGu -3'
miRNA:   3'- -GCAGUCCU-UCGGCUgCUCCa-----GCCUCu -5'
31173 3' -56.6 NC_006560.1 + 14717 0.66 0.907693
Target:  5'- aGUC--GAGGCCgGGCGAGG-CGGuGAg -3'
miRNA:   3'- gCAGucCUUCGG-CUGCUCCaGCCuCU- -5'
31173 3' -56.6 NC_006560.1 + 127334 0.66 0.907693
Target:  5'- uCGUUGGcGggGCCauaaGAGGcCGGGGAc -3'
miRNA:   3'- -GCAGUC-CuuCGGcug-CUCCaGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 101357 0.66 0.907693
Target:  5'- gCGUCgAGGcacAGGgCGGCGAGGcCGG-GAa -3'
miRNA:   3'- -GCAG-UCC---UUCgGCUGCUCCaGCCuCU- -5'
31173 3' -56.6 NC_006560.1 + 81456 0.66 0.907693
Target:  5'- gCGUCGGGcgcGGCCGggagaGCGGGGg-GGAGc -3'
miRNA:   3'- -GCAGUCCu--UCGGC-----UGCUCCagCCUCu -5'
31173 3' -56.6 NC_006560.1 + 147369 0.66 0.901554
Target:  5'- aGUCGGGGugggggguGCgGGgGGGG-CGGAGGg -3'
miRNA:   3'- gCAGUCCUu-------CGgCUgCUCCaGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 6694 0.66 0.901554
Target:  5'- -cUCGGGggGaCCGGgggcuCGGGGgcUCGGGGGg -3'
miRNA:   3'- gcAGUCCuuC-GGCU-----GCUCC--AGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 22754 0.66 0.901554
Target:  5'- --cCuGGAcGCCGACGAGGccUCGGGc- -3'
miRNA:   3'- gcaGuCCUuCGGCUGCUCC--AGCCUcu -5'
31173 3' -56.6 NC_006560.1 + 32797 0.66 0.901554
Target:  5'- ---gGGGggGCCGgggGCGcGGcCGGGGAg -3'
miRNA:   3'- gcagUCCuuCGGC---UGCuCCaGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 11489 0.66 0.901554
Target:  5'- uCGUacCGGGAGGCCu-CGGGcGcCGGGGAg -3'
miRNA:   3'- -GCA--GUCCUUCGGcuGCUC-CaGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 17675 0.66 0.901554
Target:  5'- uCGUCccGGgcGCCGugGGGccCGGGGGg -3'
miRNA:   3'- -GCAGu-CCuuCGGCugCUCcaGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 6644 0.66 0.901554
Target:  5'- -cUCGGGggGaCCGGgggcuCGGGGgcUCGGGGGg -3'
miRNA:   3'- gcAGUCCuuC-GGCU-----GCUCC--AGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 6794 0.66 0.901554
Target:  5'- -cUCGGGggGaCCGGgggcuCGGGGgcUCGGGGGg -3'
miRNA:   3'- gcAGUCCuuC-GGCU-----GCUCC--AGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 103056 0.66 0.901554
Target:  5'- cCGcUCGGGGGccGCCGguuccGCGGGGaCGGGGGg -3'
miRNA:   3'- -GC-AGUCCUU--CGGC-----UGCUCCaGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 6736 0.66 0.901554
Target:  5'- -cUCGGGggGaCCGGgggcuCGGGGgcUCGGGGGg -3'
miRNA:   3'- gcAGUCCuuC-GGCU-----GCUCC--AGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 55945 0.66 0.895189
Target:  5'- gCGUcCAGGucccguAGCgGugGGGGuguUCGGGGGg -3'
miRNA:   3'- -GCA-GUCCu-----UCGgCugCUCC---AGCCUCU- -5'
31173 3' -56.6 NC_006560.1 + 33082 0.66 0.895189
Target:  5'- aGgCGGGGaaGGCgGGCGAGGgcaGGGGGg -3'
miRNA:   3'- gCaGUCCU--UCGgCUGCUCCag-CCUCU- -5'
31173 3' -56.6 NC_006560.1 + 85254 0.66 0.895189
Target:  5'- gCGgCGcGGAAGCCGGCGcuG-CGGAGGc -3'
miRNA:   3'- -GCaGU-CCUUCGGCUGCucCaGCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.