miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31173 5' -66.6 NC_006560.1 + 52507 0.66 0.473635
Target:  5'- cGCCGCGG--CCGcGGCGGagUCCcugGCGg -3'
miRNA:   3'- aCGGCGCCcgGGC-CCGCCagAGG---UGC- -5'
31173 5' -66.6 NC_006560.1 + 34656 0.66 0.473635
Target:  5'- cG-CGCGGcGgCCGGGCGGg--UCGCGg -3'
miRNA:   3'- aCgGCGCC-CgGGCCCGCCagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 38072 0.66 0.473635
Target:  5'- cGgC-CGGGCCCcggGGGUGuGUCggugCCGCGg -3'
miRNA:   3'- aCgGcGCCCGGG---CCCGC-CAGa---GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 32921 0.66 0.473635
Target:  5'- cGCCGgGGGCCgaGGGCaGGgggCCGuCGc -3'
miRNA:   3'- aCGGCgCCCGGg-CCCG-CCagaGGU-GC- -5'
31173 5' -66.6 NC_006560.1 + 54438 0.66 0.473635
Target:  5'- cGUCGCGGGCgCCGaGGacgaaGGUCacgaacccccCCGCGu -3'
miRNA:   3'- aCGGCGCCCG-GGC-CCg----CCAGa---------GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 18851 0.66 0.473635
Target:  5'- gGCCGCGucucGCCUcuGGGCGGgg-CCGCc -3'
miRNA:   3'- aCGGCGCc---CGGG--CCCGCCagaGGUGc -5'
31173 5' -66.6 NC_006560.1 + 149484 0.66 0.473635
Target:  5'- gGCCG-GcGGCCCGGGCcGacgCUCCcCGc -3'
miRNA:   3'- aCGGCgC-CCGGGCCCGcCa--GAGGuGC- -5'
31173 5' -66.6 NC_006560.1 + 35311 0.66 0.473635
Target:  5'- cGgCGgGGGCUCGGGCucGGccCUCC-CGg -3'
miRNA:   3'- aCgGCgCCCGGGCCCG--CCa-GAGGuGC- -5'
31173 5' -66.6 NC_006560.1 + 4275 0.66 0.471019
Target:  5'- cGCCG-GGcGCCCgaggccucgaagcaGGcGCGGUCcagcUCCACGu -3'
miRNA:   3'- aCGGCgCC-CGGG--------------CC-CGCCAG----AGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 99869 0.66 0.464945
Target:  5'- cGCCGgGGGgCgCGGG-GGUCguggCgGCGg -3'
miRNA:   3'- aCGGCgCCCgG-GCCCgCCAGa---GgUGC- -5'
31173 5' -66.6 NC_006560.1 + 42727 0.66 0.464945
Target:  5'- gGCCGCGauCgCCGGGgGcGUgUCCGCGu -3'
miRNA:   3'- aCGGCGCccG-GGCCCgC-CAgAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 124560 0.66 0.464945
Target:  5'- aGCUGUGGGCCCugcugcGGCGGgggCUgaCgACGg -3'
miRNA:   3'- aCGGCGCCCGGGc-----CCGCCa--GA--GgUGC- -5'
31173 5' -66.6 NC_006560.1 + 118886 0.66 0.464945
Target:  5'- gUGCCucCGGGCCCuGGGCuGcgccaUCCGCGc -3'
miRNA:   3'- -ACGGc-GCCCGGG-CCCGcCag---AGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 12525 0.66 0.464945
Target:  5'- gGUCGcCGGGUCaguaGGGCGuGUCccggcgCCGCGc -3'
miRNA:   3'- aCGGC-GCCCGGg---CCCGC-CAGa-----GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 51661 0.66 0.464945
Target:  5'- cGCUGCGGuacgcgugcguGCuCCGGGCGGccgcccccCUCUACu -3'
miRNA:   3'- aCGGCGCC-----------CG-GGCCCGCCa-------GAGGUGc -5'
31173 5' -66.6 NC_006560.1 + 42850 0.66 0.464945
Target:  5'- gGCgGCGGGCCagccgugGGGCGucagcagccgCUCCGCc -3'
miRNA:   3'- aCGgCGCCCGGg------CCCGCca--------GAGGUGc -5'
31173 5' -66.6 NC_006560.1 + 107882 0.66 0.464945
Target:  5'- cGCCcgucagGCGGGCgacCCGGGUGG---CCGCGg -3'
miRNA:   3'- aCGG------CGCCCG---GGCCCGCCagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 90675 0.66 0.464945
Target:  5'- cGCCGCcGGCCUgguGGGCgccauGGUCUUCGg- -3'
miRNA:   3'- aCGGCGcCCGGG---CCCG-----CCAGAGGUgc -5'
31173 5' -66.6 NC_006560.1 + 118065 0.66 0.46408
Target:  5'- cGCCGCGGGCgcccccgccgagcUCGcGGCGGg--CgACGa -3'
miRNA:   3'- aCGGCGCCCG-------------GGC-CCGCCagaGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 33179 0.66 0.463217
Target:  5'- gGCCGCggggaagGGGCCCGcggggaaGGCGG---CCGCGg -3'
miRNA:   3'- aCGGCG-------CCCGGGC-------CCGCCagaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.