miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31173 5' -66.6 NC_006560.1 + 84697 0.66 0.431049
Target:  5'- cGgCGCGGGCgaCGGGCGc-CUCgGCGc -3'
miRNA:   3'- aCgGCGCCCGg-GCCCGCcaGAGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 31119 0.66 0.439388
Target:  5'- gGCCuCGGGCgCCGGGgGcGcCUCCGg- -3'
miRNA:   3'- aCGGcGCCCG-GGCCCgC-CaGAGGUgc -5'
31173 5' -66.6 NC_006560.1 + 33803 0.66 0.43022
Target:  5'- aGUCGCGGGCgCggacgggGGGCGGgggUCgGCGg -3'
miRNA:   3'- aCGGCGCCCGgG-------CCCGCCag-AGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 77008 0.66 0.43855
Target:  5'- cGCCGgGGaccuGCCCccguGGGCGGUCgacgaguUCCGgGg -3'
miRNA:   3'- aCGGCgCC----CGGG----CCCGCCAG-------AGGUgC- -5'
31173 5' -66.6 NC_006560.1 + 137638 0.66 0.439388
Target:  5'- gGCCGCGGGgCU-GGCGGagCUgCugGa -3'
miRNA:   3'- aCGGCGCCCgGGcCCGCCa-GAgGugC- -5'
31173 5' -66.6 NC_006560.1 + 1643 0.66 0.431049
Target:  5'- cUGUgGCgGGGCCgGGGC-GUCUCCc-- -3'
miRNA:   3'- -ACGgCG-CCCGGgCCCGcCAGAGGugc -5'
31173 5' -66.6 NC_006560.1 + 35107 0.66 0.431049
Target:  5'- gGCCccccaUGGGUCCGGGCcGGggUCCGCu -3'
miRNA:   3'- aCGGc----GCCCGGGCCCG-CCagAGGUGc -5'
31173 5' -66.6 NC_006560.1 + 149484 0.66 0.473635
Target:  5'- gGCCG-GcGGCCCGGGCcGacgCUCCcCGc -3'
miRNA:   3'- aCGGCgC-CCGGGCCCGcCa--GAGGuGC- -5'
31173 5' -66.6 NC_006560.1 + 92398 0.66 0.422803
Target:  5'- gGCCG-GGGCCCGcGCGcUCguggacgcggUCCACGa -3'
miRNA:   3'- aCGGCgCCCGGGCcCGCcAG----------AGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 117342 0.66 0.422803
Target:  5'- cGCCGCgcccgacaaaaGGGCCCGccgcgcccGGCGGcCgcCCACa -3'
miRNA:   3'- aCGGCG-----------CCCGGGC--------CCGCCaGa-GGUGc -5'
31173 5' -66.6 NC_006560.1 + 27214 0.66 0.422803
Target:  5'- gGaCCGCGGGgCgGGGCcGGga-CCGCGg -3'
miRNA:   3'- aC-GGCGCCCgGgCCCG-CCagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 95090 0.66 0.43022
Target:  5'- cGUCGCGGG-CCGGGCcGcCgccgacgUCCGCGa -3'
miRNA:   3'- aCGGCGCCCgGGCCCGcCaG-------AGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 131319 0.66 0.439388
Target:  5'- gGCCGCGGcCCUGuGCGGcCUCgGCc -3'
miRNA:   3'- aCGGCGCCcGGGCcCGCCaGAGgUGc -5'
31173 5' -66.6 NC_006560.1 + 80442 0.66 0.439388
Target:  5'- aGgCGgGGGCCCGGGaagaccCGGgCUcCCACu -3'
miRNA:   3'- aCgGCgCCCGGGCCC------GCCaGA-GGUGc -5'
31173 5' -66.6 NC_006560.1 + 142451 0.66 0.422803
Target:  5'- gGCCGCGcGGCCCcgcaGGuGCGG-CggcggCCGCc -3'
miRNA:   3'- aCGGCGC-CCGGG----CC-CGCCaGa----GGUGc -5'
31173 5' -66.6 NC_006560.1 + 18910 0.66 0.431049
Target:  5'- aGCCGCauccGGCCCGGcguccgugcGCGG-CgugCCGCGc -3'
miRNA:   3'- aCGGCGc---CCGGGCC---------CGCCaGa--GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 149144 0.66 0.439388
Target:  5'- cGCCGC-GGCgCgGGGCGGcCcCCAgGg -3'
miRNA:   3'- aCGGCGcCCG-GgCCCGCCaGaGGUgC- -5'
31173 5' -66.6 NC_006560.1 + 51880 0.66 0.431049
Target:  5'- cGCU-CGGGcCCCGGGCGGgg-UgGCGg -3'
miRNA:   3'- aCGGcGCCC-GGGCCCGCCagaGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 147216 0.66 0.431049
Target:  5'- cGCgGgGGGCCgGGGCGc-CUCC-CGc -3'
miRNA:   3'- aCGgCgCCCGGgCCCGCcaGAGGuGC- -5'
31173 5' -66.6 NC_006560.1 + 7185 0.66 0.431049
Target:  5'- -cCCGCGGGCCCGcGGCcccGGacauaaagCCGCGc -3'
miRNA:   3'- acGGCGCCCGGGC-CCG---CCaga-----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.