miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31173 5' -66.6 NC_006560.1 + 69 0.72 0.177536
Target:  5'- ---gGCGGGUCCGGGCGGgccCUCCccGCGc -3'
miRNA:   3'- acggCGCCCGGGCCCGCCa--GAGG--UGC- -5'
31173 5' -66.6 NC_006560.1 + 124 0.7 0.244715
Target:  5'- cGgCGCGGGUuuGGGCGGggccggccccgCcCCGCGg -3'
miRNA:   3'- aCgGCGCCCGggCCCGCCa----------GaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 216 0.69 0.29187
Target:  5'- cGCCGCgggaGGGCCCGGcccGCGG-CUCgguGCGg -3'
miRNA:   3'- aCGGCG----CCCGGGCC---CGCCaGAGg--UGC- -5'
31173 5' -66.6 NC_006560.1 + 420 0.71 0.23396
Target:  5'- cGCCuGUGGGguucCCCGGccuccGCGGcCUCCGCGg -3'
miRNA:   3'- aCGG-CGCCC----GGGCC-----CGCCaGAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 513 0.67 0.375389
Target:  5'- cGCCaCGGGCgCCGGGgGGcggCggccggCCGCGc -3'
miRNA:   3'- aCGGcGCCCG-GGCCCgCCa--Ga-----GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 606 0.69 0.317994
Target:  5'- cGCCGCGGGCaCgCGGGUucgaaucgcaaGGcUCUCgGCu -3'
miRNA:   3'- aCGGCGCCCG-G-GCCCG-----------CC-AGAGgUGc -5'
31173 5' -66.6 NC_006560.1 + 999 0.69 0.29187
Target:  5'- cGCC-CcGGCCgGGGCGccGUCUCCGCc -3'
miRNA:   3'- aCGGcGcCCGGgCCCGC--CAGAGGUGc -5'
31173 5' -66.6 NC_006560.1 + 1643 0.66 0.431049
Target:  5'- cUGUgGCgGGGCCgGGGC-GUCUCCc-- -3'
miRNA:   3'- -ACGgCG-CCCGGgCCCGcCAGAGGugc -5'
31173 5' -66.6 NC_006560.1 + 1863 0.69 0.311302
Target:  5'- gGUCGCGGGCgggggucgCGGGCGGgggUCGCGg -3'
miRNA:   3'- aCGGCGCCCGg-------GCCCGCCagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 2185 0.7 0.273399
Target:  5'- gGCCuCGGGCCCGGcGCGcG-CggCCGCGc -3'
miRNA:   3'- aCGGcGCCCGGGCC-CGC-CaGa-GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 2661 0.7 0.250245
Target:  5'- cGUCgGCGGGCCacuccuCGGGCGGcacggCgUCCACGa -3'
miRNA:   3'- aCGG-CGCCCGG------GCCCGCCa----G-AGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 2848 0.7 0.267454
Target:  5'- gGCCGUgucGGGCCCGcagaGGCGGUUggCCAgCGc -3'
miRNA:   3'- aCGGCG---CCCGGGC----CCGCCAGa-GGU-GC- -5'
31173 5' -66.6 NC_006560.1 + 3074 0.67 0.406599
Target:  5'- gGCCGgagcccGGCUCGGGCGGg--CCGCa -3'
miRNA:   3'- aCGGCgc----CCGGGCCCGCCagaGGUGc -5'
31173 5' -66.6 NC_006560.1 + 3244 0.73 0.154483
Target:  5'- gUGUgGgCGGGCCCGGGCGG-CgcgcggcgccagccgCCGCGg -3'
miRNA:   3'- -ACGgC-GCCCGGGCCCGCCaGa--------------GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 3318 0.75 0.115227
Target:  5'- cGCCGCGGGCCgggggcgCGGGCGGgcggCgUCgGCGu -3'
miRNA:   3'- aCGGCGCCCGG-------GCCCGCCa---G-AGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 3426 0.7 0.255878
Target:  5'- gGCgGCGGGCgCGGGCGc---CCGCGg -3'
miRNA:   3'- aCGgCGCCCGgGCCCGCcagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 3466 0.69 0.317994
Target:  5'- cGCuUGCGGGCCgcgCGGGCGGcgUCgGCGu -3'
miRNA:   3'- aCG-GCGCCCGG---GCCCGCCagAGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 3579 0.67 0.414652
Target:  5'- cUGCCGCGGGCUgCGGGCcagcagCggCGCGg -3'
miRNA:   3'- -ACGGCGCCCGG-GCCCGcca---GagGUGC- -5'
31173 5' -66.6 NC_006560.1 + 3741 0.69 0.285607
Target:  5'- gGCgCGCGGGCgCGGcGCGGgcgCggcggcgCCGCGc -3'
miRNA:   3'- aCG-GCGCCCGgGCC-CGCCa--Ga------GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 3798 0.69 0.304717
Target:  5'- gGCCGCcaGCCCGGGCacggcggcgaGGUCgCCGCc -3'
miRNA:   3'- aCGGCGccCGGGCCCG----------CCAGaGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.