miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31173 5' -66.6 NC_006560.1 + 149484 0.66 0.473635
Target:  5'- gGCCG-GcGGCCCGGGCcGacgCUCCcCGc -3'
miRNA:   3'- aCGGCgC-CCGGGCCCGcCa--GAGGuGC- -5'
31173 5' -66.6 NC_006560.1 + 11793 0.75 0.120955
Target:  5'- cGCCGCcggggggGGGCUcgguCGGGCGGccCUCCGCGg -3'
miRNA:   3'- aCGGCG-------CCCGG----GCCCGCCa-GAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 11925 0.75 0.121248
Target:  5'- aGCCGCGGGCCCGcaggaggggccGGCGGgccaggUCCAgGg -3'
miRNA:   3'- aCGGCGCCCGGGC-----------CCGCCag----AGGUgC- -5'
31173 5' -66.6 NC_006560.1 + 58781 0.75 0.121248
Target:  5'- aGUCGUGGGUCCGGGgGGcagggccaggaUCUUCGCGa -3'
miRNA:   3'- aCGGCGCCCGGGCCCgCC-----------AGAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 27843 0.75 0.124217
Target:  5'- gUGCCGgGGGUgCCGGG-GGUCUCC-CGc -3'
miRNA:   3'- -ACGGCgCCCG-GGCCCgCCAGAGGuGC- -5'
31173 5' -66.6 NC_006560.1 + 81428 0.75 0.124217
Target:  5'- -cCCGCGGGCCgGGGCGGcCccggUCGCGg -3'
miRNA:   3'- acGGCGCCCGGgCCCGCCaGa---GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 113459 0.75 0.126031
Target:  5'- cGCCGCGGcGCCCGacGCGGgcgccaacaccgcCUCCACGg -3'
miRNA:   3'- aCGGCGCC-CGGGCc-CGCCa------------GAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 5147 0.75 0.127253
Target:  5'- cGgCGCgGGGCCCGGGcCGGgg-CCGCGg -3'
miRNA:   3'- aCgGCG-CCCGGGCCC-GCCagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 78081 0.75 0.127253
Target:  5'- gGCCGCGGcGCUCGGG-GGcCUCgACGg -3'
miRNA:   3'- aCGGCGCC-CGGGCCCgCCaGAGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 3318 0.75 0.115227
Target:  5'- cGCCGCGGGCCgggggcgCGGGCGGgcggCgUCgGCGu -3'
miRNA:   3'- aCGGCGCCCGG-------GCCCGCCa---G-AGgUGC- -5'
31173 5' -66.6 NC_006560.1 + 131616 0.75 0.112733
Target:  5'- cGCCGCcGGCCCGgcGGCGGUCgagcgcgcCCGCGc -3'
miRNA:   3'- aCGGCGcCCGGGC--CCGCCAGa-------GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 144361 0.75 0.112733
Target:  5'- gGCCGCGGGgCCGcGGCGG-CaggggcggcgUCCGCGg -3'
miRNA:   3'- aCGGCGCCCgGGC-CCGCCaG----------AGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 18819 0.77 0.086079
Target:  5'- cGCCcacGCGGGUgcgUCGGGCGG-CUCCGCGa -3'
miRNA:   3'- aCGG---CGCCCG---GGCCCGCCaGAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 134778 0.77 0.08823
Target:  5'- cGCgCGCaGGGUCgGGGCGGcgcgCUCCACGg -3'
miRNA:   3'- aCG-GCG-CCCGGgCCCGCCa---GAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 34940 0.76 0.094762
Target:  5'- gGCCGCucccgcgcccccgGGGCCCGGGCGccgggCUCCGCc -3'
miRNA:   3'- aCGGCG-------------CCCGGGCCCGCca---GAGGUGc -5'
31173 5' -66.6 NC_006560.1 + 23506 0.76 0.097357
Target:  5'- cGCCGCGGaguGCCU-GGCGGUCUgCCGCGc -3'
miRNA:   3'- aCGGCGCC---CGGGcCCGCCAGA-GGUGC- -5'
31173 5' -66.6 NC_006560.1 + 41706 0.76 0.10478
Target:  5'- cGCCGCGGGUCCgcguGGGCGG---CCACGa -3'
miRNA:   3'- aCGGCGCCCGGG----CCCGCCagaGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 146086 0.76 0.107371
Target:  5'- aGCgGCGGGCCCacuGCGG-CUCCGCGu -3'
miRNA:   3'- aCGgCGCCCGGGcc-CGCCaGAGGUGC- -5'
31173 5' -66.6 NC_006560.1 + 39620 0.75 0.112459
Target:  5'- cGCCGCGGcgggcgucggcGUCCGGGCGcggcggaGUCUCCGCu -3'
miRNA:   3'- aCGGCGCC-----------CGGGCCCGC-------CAGAGGUGc -5'
31173 5' -66.6 NC_006560.1 + 43959 0.75 0.112733
Target:  5'- cGcCCGCGGGCCCGGGCGuGgugCC-CGa -3'
miRNA:   3'- aC-GGCGCCCGGGCCCGC-CagaGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.