miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31175 3' -64 NC_006560.1 + 146283 0.66 0.576126
Target:  5'- gGGCCggaCGCCGCGGGg-GCgCGGUCgGCGu -3'
miRNA:   3'- -CCGG---GCGGUGCUCggCG-GCCAGaCGU- -5'
31175 3' -64 NC_006560.1 + 65111 0.66 0.576126
Target:  5'- uGGcCCCGggGCGGGCCGCgGGg--GCGg -3'
miRNA:   3'- -CC-GGGCggUGCUCGGCGgCCagaCGU- -5'
31175 3' -64 NC_006560.1 + 27505 0.66 0.576126
Target:  5'- cGCUCGCCAcccucacucuCGGccGCCGUCGGUCUcucucGCGc -3'
miRNA:   3'- cCGGGCGGU----------GCU--CGGCGGCCAGA-----CGU- -5'
31175 3' -64 NC_006560.1 + 118229 0.66 0.576126
Target:  5'- uGGCCCGCC---GGCaC-CCGGUCcGCGc -3'
miRNA:   3'- -CCGGGCGGugcUCG-GcGGCCAGaCGU- -5'
31175 3' -64 NC_006560.1 + 120468 0.66 0.576126
Target:  5'- cGGCUCcacCCGCGGGCCGCgcaucgCGGcccacCUGCAc -3'
miRNA:   3'- -CCGGGc--GGUGCUCGGCG------GCCa----GACGU- -5'
31175 3' -64 NC_006560.1 + 146557 0.66 0.576126
Target:  5'- aGGCCCGCUuggguccccGCGAGCCGgaGG-CgcccccgGCGc -3'
miRNA:   3'- -CCGGGCGG---------UGCUCGGCggCCaGa------CGU- -5'
31175 3' -64 NC_006560.1 + 81413 0.66 0.576126
Target:  5'- gGGCgCGCgccaccaccCGCGGGCCGgggcggccCCGGUCgcgGCGu -3'
miRNA:   3'- -CCGgGCG---------GUGCUCGGC--------GGCCAGa--CGU- -5'
31175 3' -64 NC_006560.1 + 118996 0.66 0.576126
Target:  5'- aGGUCgCGCgGCGc-CUGCCGGUgCUGCu -3'
miRNA:   3'- -CCGG-GCGgUGCucGGCGGCCA-GACGu -5'
31175 3' -64 NC_006560.1 + 111369 0.66 0.575167
Target:  5'- uGGCCCggGCCACGcuGGUgGCCGaGcugaagcggagcuUCUGCGa -3'
miRNA:   3'- -CCGGG--CGGUGC--UCGgCGGC-C-------------AGACGU- -5'
31175 3' -64 NC_006560.1 + 43240 0.66 0.575167
Target:  5'- cGGUCCGaCACGcgcaggcAGCCGC-GGUCgUGCGc -3'
miRNA:   3'- -CCGGGCgGUGC-------UCGGCGgCCAG-ACGU- -5'
31175 3' -64 NC_006560.1 + 4490 0.66 0.566552
Target:  5'- gGGCgCGCCccaGAGCC-CCGGgcggCUGUc -3'
miRNA:   3'- -CCGgGCGGug-CUCGGcGGCCa---GACGu -5'
31175 3' -64 NC_006560.1 + 116889 0.66 0.566552
Target:  5'- gGGCCgGUCGuCG-GCCGCCucgcGGcUCUGCc -3'
miRNA:   3'- -CCGGgCGGU-GCuCGGCGG----CC-AGACGu -5'
31175 3' -64 NC_006560.1 + 14622 0.66 0.566552
Target:  5'- cGGCCCucgggcCCGCGGGCgGCaCGG-CcGCAa -3'
miRNA:   3'- -CCGGGc-----GGUGCUCGgCG-GCCaGaCGU- -5'
31175 3' -64 NC_006560.1 + 69671 0.66 0.566552
Target:  5'- cGCCCGCCACcccgGGGUCGgCGcugCUGCc -3'
miRNA:   3'- cCGGGCGGUG----CUCGGCgGCca-GACGu -5'
31175 3' -64 NC_006560.1 + 3927 0.66 0.565597
Target:  5'- -cUCCGCCGCGGgggcggcGCCGC-GGUCgGCGg -3'
miRNA:   3'- ccGGGCGGUGCU-------CGGCGgCCAGaCGU- -5'
31175 3' -64 NC_006560.1 + 114199 0.66 0.55702
Target:  5'- gGGCCCgGCC-C-AGCCccuGCCGGUCUuugGCu -3'
miRNA:   3'- -CCGGG-CGGuGcUCGG---CGGCCAGA---CGu -5'
31175 3' -64 NC_006560.1 + 108518 0.66 0.55702
Target:  5'- cGGCCgGCgGCGGGCCcgggggcgcGUCGGggcgGCAg -3'
miRNA:   3'- -CCGGgCGgUGCUCGG---------CGGCCaga-CGU- -5'
31175 3' -64 NC_006560.1 + 5661 0.66 0.55702
Target:  5'- cGGCuCCGCCcCGGGgCGCgGGg--GCGg -3'
miRNA:   3'- -CCG-GGCGGuGCUCgGCGgCCagaCGU- -5'
31175 3' -64 NC_006560.1 + 22212 0.66 0.55702
Target:  5'- cGGCCCGCCcccGCG-GCC-CCGGcCcggGCc -3'
miRNA:   3'- -CCGGGCGG---UGCuCGGcGGCCaGa--CGu -5'
31175 3' -64 NC_006560.1 + 69080 0.66 0.556069
Target:  5'- cGGCaguggCCGCCcuccugggcucggGCGAGCCGCC-GUCcGCc -3'
miRNA:   3'- -CCG-----GGCGG-------------UGCUCGGCGGcCAGaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.