miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31175 5' -54.8 NC_006560.1 + 147127 0.66 0.942985
Target:  5'- --gGCCGcGGCGcgaggCGCGcGCGCcGCGGCg -3'
miRNA:   3'- caaCGGC-UCGUa----GCGCaUGUG-CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 4861 0.66 0.942985
Target:  5'- --cGgCGAGguUCGCGUcgACG-GCGGCg -3'
miRNA:   3'- caaCgGCUCguAGCGCA--UGUgCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 35257 0.66 0.942985
Target:  5'- -cUGCgGGGCcgCGCGgccgccGCGCcggGCGGCg -3'
miRNA:   3'- caACGgCUCGuaGCGCa-----UGUG---CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 144041 0.66 0.942985
Target:  5'- --cGCCGGGC-UCGCcuaagcgGCcCGCGGCc -3'
miRNA:   3'- caaCGGCUCGuAGCGca-----UGuGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 10365 0.66 0.942985
Target:  5'- --cGCCGuGgaGUUGgGgGCGCGCGACa -3'
miRNA:   3'- caaCGGCuCg-UAGCgCaUGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 137241 0.66 0.942985
Target:  5'- --cGCUGGGgG-CGCGggcgGCGgGCGACg -3'
miRNA:   3'- caaCGGCUCgUaGCGCa---UGUgCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 131109 0.66 0.942985
Target:  5'- --cGCCGAGC-UgGCGggggccugGCcCGCGGCc -3'
miRNA:   3'- caaCGGCUCGuAgCGCa-------UGuGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 115445 0.66 0.94206
Target:  5'- --cGCgCGAG-AUCGUGgcgcggcuggugGCGCGCGGCa -3'
miRNA:   3'- caaCG-GCUCgUAGCGCa-----------UGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 88175 0.66 0.940182
Target:  5'- --gGCCGcGGCcauccgcucgcagagGUCGCGggGgGCGCGGCa -3'
miRNA:   3'- caaCGGC-UCG---------------UAGCGCa-UgUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 25268 0.66 0.938264
Target:  5'- --cGCCGcGCcgcUCGUGcUGCGCGcCGACg -3'
miRNA:   3'- caaCGGCuCGu--AGCGC-AUGUGC-GCUG- -5'
31175 5' -54.8 NC_006560.1 + 114031 0.66 0.938264
Target:  5'- ---cCUGGGCGUgGgGUACACgGCGGCc -3'
miRNA:   3'- caacGGCUCGUAgCgCAUGUG-CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 108128 0.66 0.938264
Target:  5'- --cGCCGAGCGccagCGCGU-CGCG-GAa -3'
miRNA:   3'- caaCGGCUCGUa---GCGCAuGUGCgCUg -5'
31175 5' -54.8 NC_006560.1 + 49102 0.66 0.938264
Target:  5'- -gUGCUccggGAGCA-CGCGUACAgccgccgcCGCGAg -3'
miRNA:   3'- caACGG----CUCGUaGCGCAUGU--------GCGCUg -5'
31175 5' -54.8 NC_006560.1 + 43836 0.66 0.938264
Target:  5'- --gGCCuccGCGUCGaggGUGCGgGCGACg -3'
miRNA:   3'- caaCGGcu-CGUAGCg--CAUGUgCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 119057 0.66 0.938264
Target:  5'- --gGCCGA-CGUCuucuuccggacgGCGUACGCgGCGGCc -3'
miRNA:   3'- caaCGGCUcGUAG------------CGCAUGUG-CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 59591 0.66 0.938264
Target:  5'- -gUGCCGGGCGggagaCGaGUACcgaaacCGCGACa -3'
miRNA:   3'- caACGGCUCGUa----GCgCAUGu-----GCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 37248 0.66 0.938264
Target:  5'- -cUGCUGccCGUCGCGgacuCACGCGcACg -3'
miRNA:   3'- caACGGCucGUAGCGCau--GUGCGC-UG- -5'
31175 5' -54.8 NC_006560.1 + 22829 0.66 0.933808
Target:  5'- cGggGCCGAGCccccgcccccggggCGCGUGCucuACgGCGGCc -3'
miRNA:   3'- -CaaCGGCUCGua------------GCGCAUG---UG-CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 54653 0.66 0.9333
Target:  5'- --cGCgggaUGAGgGUCGCGgGgGCGCGGCa -3'
miRNA:   3'- caaCG----GCUCgUAGCGCaUgUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 80522 0.66 0.9333
Target:  5'- -gUGCgGAGCAccggUCGCa-GCGCGCuGGCg -3'
miRNA:   3'- caACGgCUCGU----AGCGcaUGUGCG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.