Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31175 | 5' | -54.8 | NC_006560.1 | + | 137624 | 0.66 | 0.91694 |
Target: 5'- --cGCCGgcGGCA-CGCGgcCGCGgGGCu -3' miRNA: 3'- caaCGGC--UCGUaGCGCauGUGCgCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 39314 | 0.66 | 0.9333 |
Target: 5'- --gGCCGGGCGggGCGgugGgGCGgGGCc -3' miRNA: 3'- caaCGGCUCGUagCGCa--UgUGCgCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 3579 | 0.66 | 0.93279 |
Target: 5'- -cUGCCGcgggcugcgggccAGCAgcggCGCGgcgGCGCcgGCGACg -3' miRNA: 3'- caACGGC-------------UCGUa---GCGCa--UGUG--CGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 124119 | 0.66 | 0.922638 |
Target: 5'- --cGCCGcggggcacccacGGCGUCGCG-GCGC-CGGCg -3' miRNA: 3'- caaCGGC------------UCGUAGCGCaUGUGcGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 81542 | 0.66 | 0.91694 |
Target: 5'- --cGCCaGGGCGUgCuCGgcCGCGCGACa -3' miRNA: 3'- caaCGG-CUCGUA-GcGCauGUGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 91215 | 0.66 | 0.922079 |
Target: 5'- -gUGCUGGGCAacuacgcCGCGUucucggccaucaaGCGCGcCGACg -3' miRNA: 3'- caACGGCUCGUa------GCGCA-------------UGUGC-GCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 22289 | 0.66 | 0.922638 |
Target: 5'- ---cCCGGGCggCGCGccGCACGcCGGCg -3' miRNA: 3'- caacGGCUCGuaGCGCa-UGUGC-GCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 3743 | 0.66 | 0.928092 |
Target: 5'- --cGCgCGGGCGcggCGCGg--GCGCGGCg -3' miRNA: 3'- caaCG-GCUCGUa--GCGCaugUGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 78320 | 0.66 | 0.928092 |
Target: 5'- --gGCCcucGGGCcagCGCGUGCuggucCGCGGCg -3' miRNA: 3'- caaCGG---CUCGua-GCGCAUGu----GCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 108687 | 0.66 | 0.91694 |
Target: 5'- --cGCCGGGcCGUCGuCGaggggggGC-CGCGACa -3' miRNA: 3'- caaCGGCUC-GUAGC-GCa------UGuGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 112425 | 0.66 | 0.91694 |
Target: 5'- --cGCCGGGCccgGCGUGgugcaggcCACGUGGCg -3' miRNA: 3'- caaCGGCUCGuagCGCAU--------GUGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 100496 | 0.66 | 0.922638 |
Target: 5'- gGggGCCGcGGCGcucgaagaUCGCGgcGCugGCGGCc -3' miRNA: 3'- -CaaCGGC-UCGU--------AGCGCa-UGugCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 57549 | 0.66 | 0.928092 |
Target: 5'- --cGCCGc-CGUCGCGUACGCcgccgccaggGCGAa -3' miRNA: 3'- caaCGGCucGUAGCGCAUGUG----------CGCUg -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 13659 | 0.66 | 0.922638 |
Target: 5'- --cGCCGAgacGCA-CGCGa--GCGCGACc -3' miRNA: 3'- caaCGGCU---CGUaGCGCaugUGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 21594 | 0.66 | 0.928092 |
Target: 5'- -cUGCCcccuGCuucCGCGccUGCGCGCGGCg -3' miRNA: 3'- caACGGcu--CGua-GCGC--AUGUGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 142343 | 0.66 | 0.926481 |
Target: 5'- --aGCCGGGCccCGCGcGCGCcucgggggccggggGCGGCg -3' miRNA: 3'- caaCGGCUCGuaGCGCaUGUG--------------CGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 30035 | 0.66 | 0.91694 |
Target: 5'- --gGCCGAGgAggCG-GUGCGCGcCGGCa -3' miRNA: 3'- caaCGGCUCgUa-GCgCAUGUGC-GCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 144041 | 0.66 | 0.942985 |
Target: 5'- --cGCCGGGC-UCGCcuaagcgGCcCGCGGCc -3' miRNA: 3'- caaCGGCUCGuAGCGca-----UGuGCGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 95265 | 0.66 | 0.922638 |
Target: 5'- -gUGUCGAacggcuucGCGgcgCGCGUGCGCuuucGCGACc -3' miRNA: 3'- caACGGCU--------CGUa--GCGCAUGUG----CGCUG- -5' |
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31175 | 5' | -54.8 | NC_006560.1 | + | 9598 | 0.66 | 0.922638 |
Target: 5'- --cGgCGAGCGgagCGCGgg-GCGCGGCc -3' miRNA: 3'- caaCgGCUCGUa--GCGCaugUGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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