miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31175 5' -54.8 NC_006560.1 + 18963 0.85 0.13125
Target:  5'- --cGCCGGGCGUCGCGgGC-CGCGACg -3'
miRNA:   3'- caaCGGCUCGUAGCGCaUGuGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 80969 0.8 0.259908
Target:  5'- --cGCC-AGCGugugguUCGCGUGCGCGCGACa -3'
miRNA:   3'- caaCGGcUCGU------AGCGCAUGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 118080 0.77 0.376447
Target:  5'- --cGCCGAGC-UCGCG-GCGgGCGACg -3'
miRNA:   3'- caaCGGCUCGuAGCGCaUGUgCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 4082 0.76 0.437436
Target:  5'- --cGCC-AGCAggggCGCGUAgGCGCGGCg -3'
miRNA:   3'- caaCGGcUCGUa---GCGCAUgUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 9099 0.76 0.446604
Target:  5'- --gGCgGAGCGcgCGCGcgGCGCGCGGCa -3'
miRNA:   3'- caaCGgCUCGUa-GCGCa-UGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 2958 0.75 0.465256
Target:  5'- --cGCCGGGCAgcggCGCGUagagcaccaGCACGCGcACu -3'
miRNA:   3'- caaCGGCUCGUa---GCGCA---------UGUGCGC-UG- -5'
31175 5' -54.8 NC_006560.1 + 72619 0.75 0.503717
Target:  5'- --cGCCGGGCcgCGCG-GCACGCcGCg -3'
miRNA:   3'- caaCGGCUCGuaGCGCaUGUGCGcUG- -5'
31175 5' -54.8 NC_006560.1 + 126458 0.75 0.503717
Target:  5'- -gUGCCuGGCGUCGC--GCACGUGGCg -3'
miRNA:   3'- caACGGcUCGUAGCGcaUGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 47165 0.74 0.523461
Target:  5'- --cGCCGAGC-UCGCG-AgGCGCGAg -3'
miRNA:   3'- caaCGGCUCGuAGCGCaUgUGCGCUg -5'
31175 5' -54.8 NC_006560.1 + 55011 0.74 0.533444
Target:  5'- gGggGCgGGGCG-CGCGgaaagGCGCGCGGCg -3'
miRNA:   3'- -CaaCGgCUCGUaGCGCa----UGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 82226 0.74 0.563772
Target:  5'- -cUGCgCGAGCAguUCgGCGUGCGCGCacGGCg -3'
miRNA:   3'- caACG-GCUCGU--AG-CGCAUGUGCG--CUG- -5'
31175 5' -54.8 NC_006560.1 + 134559 0.73 0.573988
Target:  5'- --cGCgGAGCG-CGCG-GCAUGCGACg -3'
miRNA:   3'- caaCGgCUCGUaGCGCaUGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 114355 0.73 0.594538
Target:  5'- --gGCCGGGgG-CGCGUACGCggGCGACc -3'
miRNA:   3'- caaCGGCUCgUaGCGCAUGUG--CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 34494 0.73 0.600728
Target:  5'- --aGCCGGGgGUCGCGgcuccggaggccgGCACGgGGCg -3'
miRNA:   3'- caaCGGCUCgUAGCGCa------------UGUGCgCUG- -5'
31175 5' -54.8 NC_006560.1 + 18308 0.73 0.601761
Target:  5'- --gGCgGAGCcccuggggacgcccGUCGuCGUGCGCGCGGCc -3'
miRNA:   3'- caaCGgCUCG--------------UAGC-GCAUGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 18806 0.73 0.615202
Target:  5'- --cGCCGucGCGUCGCGccCACGCGGg -3'
miRNA:   3'- caaCGGCu-CGUAGCGCauGUGCGCUg -5'
31175 5' -54.8 NC_006560.1 + 127116 0.72 0.635918
Target:  5'- cGUUGCCccccaccAGCGUCGCGU--GCGUGACc -3'
miRNA:   3'- -CAACGGc------UCGUAGCGCAugUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 110164 0.72 0.635918
Target:  5'- --cGCUGuGCGUCGCGaGCGcCGUGGCg -3'
miRNA:   3'- caaCGGCuCGUAGCGCaUGU-GCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 36916 0.72 0.635918
Target:  5'- --gGCCGAGCGccggaGCGU-CugGCGGCg -3'
miRNA:   3'- caaCGGCUCGUag---CGCAuGugCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 109171 0.72 0.656621
Target:  5'- --cGCCGGGCcggcgGUCGCGUGgGCGgcaGACg -3'
miRNA:   3'- caaCGGCUCG-----UAGCGCAUgUGCg--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.