miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31175 5' -54.8 NC_006560.1 + 101350 0.66 0.9333
Target:  5'- --cGCCuGGGCGUCGag-GCACaggGCGGCg -3'
miRNA:   3'- caaCGG-CUCGUAGCgcaUGUG---CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 80522 0.66 0.9333
Target:  5'- -gUGCgGAGCAccggUCGCa-GCGCGCuGGCg -3'
miRNA:   3'- caACGgCUCGU----AGCGcaUGUGCG-CUG- -5'
31175 5' -54.8 NC_006560.1 + 26247 0.66 0.9333
Target:  5'- --gGCCGGGCcggaggggggCGCGU-CGCGgGGCu -3'
miRNA:   3'- caaCGGCUCGua--------GCGCAuGUGCgCUG- -5'
31175 5' -54.8 NC_006560.1 + 39314 0.66 0.9333
Target:  5'- --gGCCGGGCGggGCGgugGgGCGgGGCc -3'
miRNA:   3'- caaCGGCUCGUagCGCa--UgUGCgCUG- -5'
31175 5' -54.8 NC_006560.1 + 74477 0.66 0.9333
Target:  5'- -cUGCUG-GCGgaggCGCGcGCGCGCGcCg -3'
miRNA:   3'- caACGGCuCGUa---GCGCaUGUGCGCuG- -5'
31175 5' -54.8 NC_006560.1 + 3579 0.66 0.93279
Target:  5'- -cUGCCGcgggcugcgggccAGCAgcggCGCGgcgGCGCcgGCGACg -3'
miRNA:   3'- caACGGC-------------UCGUa---GCGCa--UGUG--CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 21594 0.66 0.928092
Target:  5'- -cUGCCcccuGCuucCGCGccUGCGCGCGGCg -3'
miRNA:   3'- caACGGcu--CGua-GCGC--AUGUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 78320 0.66 0.928092
Target:  5'- --gGCCcucGGGCcagCGCGUGCuggucCGCGGCg -3'
miRNA:   3'- caaCGG---CUCGua-GCGCAUGu----GCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 57549 0.66 0.928092
Target:  5'- --cGCCGc-CGUCGCGUACGCcgccgccaggGCGAa -3'
miRNA:   3'- caaCGGCucGUAGCGCAUGUG----------CGCUg -5'
31175 5' -54.8 NC_006560.1 + 3743 0.66 0.928092
Target:  5'- --cGCgCGGGCGcggCGCGg--GCGCGGCg -3'
miRNA:   3'- caaCG-GCUCGUa--GCGCaugUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 142343 0.66 0.926481
Target:  5'- --aGCCGGGCccCGCGcGCGCcucgggggccggggGCGGCg -3'
miRNA:   3'- caaCGGCUCGuaGCGCaUGUG--------------CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 124119 0.66 0.922638
Target:  5'- --cGCCGcggggcacccacGGCGUCGCG-GCGC-CGGCg -3'
miRNA:   3'- caaCGGC------------UCGUAGCGCaUGUGcGCUG- -5'
31175 5' -54.8 NC_006560.1 + 100496 0.66 0.922638
Target:  5'- gGggGCCGcGGCGcucgaagaUCGCGgcGCugGCGGCc -3'
miRNA:   3'- -CaaCGGC-UCGU--------AGCGCa-UGugCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 13659 0.66 0.922638
Target:  5'- --cGCCGAgacGCA-CGCGa--GCGCGACc -3'
miRNA:   3'- caaCGGCU---CGUaGCGCaugUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 9598 0.66 0.922638
Target:  5'- --cGgCGAGCGgagCGCGgg-GCGCGGCc -3'
miRNA:   3'- caaCgGCUCGUa--GCGCaugUGCGCUG- -5'
31175 5' -54.8 NC_006560.1 + 22289 0.66 0.922638
Target:  5'- ---cCCGGGCggCGCGccGCACGcCGGCg -3'
miRNA:   3'- caacGGCUCGuaGCGCa-UGUGC-GCUG- -5'
31175 5' -54.8 NC_006560.1 + 95265 0.66 0.922638
Target:  5'- -gUGUCGAacggcuucGCGgcgCGCGUGCGCuuucGCGACc -3'
miRNA:   3'- caACGGCU--------CGUa--GCGCAUGUG----CGCUG- -5'
31175 5' -54.8 NC_006560.1 + 91215 0.66 0.922079
Target:  5'- -gUGCUGGGCAacuacgcCGCGUucucggccaucaaGCGCGcCGACg -3'
miRNA:   3'- caACGGCUCGUa------GCGCA-------------UGUGC-GCUG- -5'
31175 5' -54.8 NC_006560.1 + 30035 0.66 0.91694
Target:  5'- --gGCCGAGgAggCG-GUGCGCGcCGGCa -3'
miRNA:   3'- caaCGGCUCgUa-GCgCAUGUGC-GCUG- -5'
31175 5' -54.8 NC_006560.1 + 81542 0.66 0.91694
Target:  5'- --cGCCaGGGCGUgCuCGgcCGCGCGACa -3'
miRNA:   3'- caaCGG-CUCGUA-GcGCauGUGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.