miRNA display CGI

Results 1 - 20 of 795 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31178	3'	-67.7	NC_006560.1	+	65636	0.66	0.442955
	Target:  5'- cGGuuC-CCGGCCaaccacacccaGCCCCUC-CCGCGCc -3' miRNA:   3'- -CCugGcGGUCGG-----------CGGGGGGcGGCGCG- -5'
31178	3'	-67.7	NC_006560.1	+	8092	0.66	0.442955
	Target:  5'- cGGCUG-CGGCaGCCCCgCGCCGacCGCc -3' miRNA:   3'- cCUGGCgGUCGgCGGGGgGCGGC--GCG- -5'
31178	3'	-67.7	NC_006560.1	+	149950	0.66	0.442955
	Target:  5'- cGAUC-CCGGCUGCCCgCgCGCgCGUGUc -3' miRNA:   3'- cCUGGcGGUCGGCGGGgG-GCG-GCGCG- -5'
31178	3'	-67.7	NC_006560.1	+	136609	0.66	0.442955
	Target:  5'- uGAgCGCCuacauGGCgCGCCUCCaCGCCcaccucaaggugGCGCg -3' miRNA:   3'- cCUgGCGG-----UCG-GCGGGGG-GCGG------------CGCG- -5'
31178	3'	-67.7	NC_006560.1	+	16308	0.66	0.442955
	Target:  5'- cGGGgCGCgGGcCCGCgCCCgCGagGCGCa -3' miRNA:   3'- -CCUgGCGgUC-GGCGgGGG-GCggCGCG- -5'
31178	3'	-67.7	NC_006560.1	+	75666	0.66	0.442955
	Target:  5'- ---gCGCCAcccggcGCUGCCCCCgcuCGCCGcCGUc -3' miRNA:   3'- ccugGCGGU------CGGCGGGGG---GCGGC-GCG- -5'
31178	3'	-67.7	NC_006560.1	+	125893	0.66	0.442955
	Target:  5'- cGACCGCCacuggAGCCGCag-CgGCCgGCGCc -3' miRNA:   3'- cCUGGCGG-----UCGGCGgggGgCGG-CGCG- -5'
31178	3'	-67.7	NC_006560.1	+	16068	0.66	0.442955
	Target:  5'- aGGCCaCCcgGGCCGCguaggCCCCGCCGuCGg -3' miRNA:   3'- cCUGGcGG--UCGGCGg----GGGGCGGC-GCg -5'
31178	3'	-67.7	NC_006560.1	+	29922	0.66	0.442955
	Target:  5'- ---gCGCaaCAGCUGCCCCCucgcaaCGCCGUGg -3' miRNA:   3'- ccugGCG--GUCGGCGGGGG------GCGGCGCg -5'
31178	3'	-67.7	NC_006560.1	+	5646	0.66	0.442955
	Target:  5'- cGGGCggCGcCCGGCCGgcuCCgCCCCGggGCGCg -3' miRNA:   3'- -CCUG--GC-GGUCGGC---GG-GGGGCggCGCG- -5'
31178	3'	-67.7	NC_006560.1	+	8996	0.66	0.442955
	Target:  5'- cGGCgC-CCAGCCcgagcGCgCCCCGCacccaGCGCa -3' miRNA:   3'- cCUG-GcGGUCGG-----CGgGGGGCGg----CGCG- -5'
31178	3'	-67.7	NC_006560.1	+	103009	0.66	0.442955
	Target:  5'- uGGAguaccCCGCCu-CCGCgCCCgGUCGaCGCg -3' miRNA:   3'- -CCU-----GGCGGucGGCGgGGGgCGGC-GCG- -5'
31178	3'	-67.7	NC_006560.1	+	131691	0.66	0.442955
	Target:  5'- gGGGCUGCUccgcccggaggAGCC-CCCCCCGUCccuggaGCu -3' miRNA:   3'- -CCUGGCGG-----------UCGGcGGGGGGCGGcg----CG- -5'
31178	3'	-67.7	NC_006560.1	+	48174	0.66	0.442955
	Target:  5'- -uGCCGCC-GCCGCccguccccaucCCCCCGgCG-GCc -3' miRNA:   3'- ccUGGCGGuCGGCG-----------GGGGGCgGCgCG- -5'
31178	3'	-67.7	NC_006560.1	+	146567	0.66	0.442955
	Target:  5'- gGGuccCCGCgAGCCggaggcGCCCCCggCGCCcgaggccggGCGCu -3' miRNA:   3'- -CCu--GGCGgUCGG------CGGGGG--GCGG---------CGCG- -5'
31178	3'	-67.7	NC_006560.1	+	131249	0.66	0.442955
	Target:  5'- uGGACCcaCCGGCUgucaucggGCCCgUCUGCCugGCGCg -3' miRNA:   3'- -CCUGGc-GGUCGG--------CGGG-GGGCGG--CGCG- -5'
31178	3'	-67.7	NC_006560.1	+	8652	0.66	0.442955
	Target:  5'- cGACgaaGCCGGCgGCCCgcgUUCGCCG-GCg -3' miRNA:   3'- cCUGg--CGGUCGgCGGG---GGGCGGCgCG- -5'
31178	3'	-67.7	NC_006560.1	+	31781	0.66	0.442955
	Target:  5'- uGGACucgCGCCAcCCcuggaCCCCCGCCGaggGCg -3' miRNA:   3'- -CCUG---GCGGUcGGcg---GGGGGCGGCg--CG- -5'
31178	3'	-67.7	NC_006560.1	+	78866	0.66	0.442955
	Target:  5'- cGGuGCCcCCuucucGCUGuCCCaCCUGCUGCGCg -3' miRNA:   3'- -CC-UGGcGGu----CGGC-GGG-GGGCGGCGCG- -5'
31178	3'	-67.7	NC_006560.1	+	93159	0.66	0.442122
	Target:  5'- gGGcGCCGCguGUCGCgucccccccaCCaCCCGCCguuccucGCGCg -3' miRNA:   3'- -CC-UGGCGguCGGCG----------GG-GGGCGG-------CGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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