miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31178 5' -56.3 NC_006560.1 + 1973 0.66 0.911781
Target:  5'- -gGCgGGGGCGGGGCuCGGG-GCcgGGCCa -3'
miRNA:   3'- uaUG-CUCUGCCUCGcGCUCaCG--CUGG- -5'
31178 5' -56.3 NC_006560.1 + 106435 0.66 0.911781
Target:  5'- -cGCgGAGGCGGu-CGCG-G-GCGACCg -3'
miRNA:   3'- uaUG-CUCUGCCucGCGCuCaCGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 76275 0.66 0.911781
Target:  5'- -cGCGuGACGGccgcccuGCGgGAGgcccucGCGGCCc -3'
miRNA:   3'- uaUGCuCUGCCu------CGCgCUCa-----CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 16625 0.66 0.911781
Target:  5'- -gGCGGGGCGGguguacgccgGGCgGCGGuUGCGcGCCg -3'
miRNA:   3'- uaUGCUCUGCC----------UCG-CGCUcACGC-UGG- -5'
31178 5' -56.3 NC_006560.1 + 77409 0.66 0.911781
Target:  5'- --cCGAGGCGGcGCGCGc--GCGcCCg -3'
miRNA:   3'- uauGCUCUGCCuCGCGCucaCGCuGG- -5'
31178 5' -56.3 NC_006560.1 + 20667 0.66 0.911781
Target:  5'- cUGCGcGGA-GGGGCGCGGGcggGCagaGGCCg -3'
miRNA:   3'- uAUGC-UCUgCCUCGCGCUCa--CG---CUGG- -5'
31178 5' -56.3 NC_006560.1 + 47167 0.66 0.905738
Target:  5'- --cCGAGcucGCGaGGCGCGAGgGgGGCCg -3'
miRNA:   3'- uauGCUC---UGCcUCGCGCUCaCgCUGG- -5'
31178 5' -56.3 NC_006560.1 + 97377 0.66 0.905738
Target:  5'- -gACGcGGCGGccGGC-CGGGgGCGACCc -3'
miRNA:   3'- uaUGCuCUGCC--UCGcGCUCaCGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 11150 0.66 0.905738
Target:  5'- --cCGGGGCGGcGCgGCGAGcGCGAg- -3'
miRNA:   3'- uauGCUCUGCCuCG-CGCUCaCGCUgg -5'
31178 5' -56.3 NC_006560.1 + 147995 0.66 0.905738
Target:  5'- ---gGAGGCGGGGCG-Guc-GCGGCCc -3'
miRNA:   3'- uaugCUCUGCCUCGCgCucaCGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 83739 0.66 0.905738
Target:  5'- --cCGAcGCGGAGCuCGGGccccucaugGCGACCg -3'
miRNA:   3'- uauGCUcUGCCUCGcGCUCa--------CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 75150 0.66 0.905738
Target:  5'- -gGCGGcGGCGGuGCGgcgggagaacccCGAGgccgaggGCGACCg -3'
miRNA:   3'- uaUGCU-CUGCCuCGC------------GCUCa------CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 83510 0.66 0.905738
Target:  5'- -cGCGAGgggGCGGGcCGCGGGcGCGcGCCc -3'
miRNA:   3'- uaUGCUC---UGCCUcGCGCUCaCGC-UGG- -5'
31178 5' -56.3 NC_006560.1 + 26366 0.66 0.905738
Target:  5'- -gGCGGGGCGGAGacgGCGccc-CGGCCg -3'
miRNA:   3'- uaUGCUCUGCCUCg--CGCucacGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 18997 0.66 0.899463
Target:  5'- -aGCGAGGcCGGAGUaCGcGUGgGACUc -3'
miRNA:   3'- uaUGCUCU-GCCUCGcGCuCACgCUGG- -5'
31178 5' -56.3 NC_006560.1 + 17104 0.66 0.899463
Target:  5'- -cGCGAGGCucagGGGGCGgGAGcggGCgcggGACCc -3'
miRNA:   3'- uaUGCUCUG----CCUCGCgCUCa--CG----CUGG- -5'
31178 5' -56.3 NC_006560.1 + 2923 0.66 0.899463
Target:  5'- -gGCG-GGCGGGGCGgGGGagacGCcGCCg -3'
miRNA:   3'- uaUGCuCUGCCUCGCgCUCa---CGcUGG- -5'
31178 5' -56.3 NC_006560.1 + 147382 0.66 0.899463
Target:  5'- gGUGCGGGgggggcggaGgGGAGCGCG-G-GCGGCa -3'
miRNA:   3'- -UAUGCUC---------UgCCUCGCGCuCaCGCUGg -5'
31178 5' -56.3 NC_006560.1 + 32398 0.66 0.899463
Target:  5'- -cGCgGGGGCGGAGgGUGGGgGCcgaGGCCc -3'
miRNA:   3'- uaUG-CUCUGCCUCgCGCUCaCG---CUGG- -5'
31178 5' -56.3 NC_006560.1 + 81560 0.66 0.899463
Target:  5'- -cGCGcGACagaGGAuGCGcCGcGUGCGGCCg -3'
miRNA:   3'- uaUGCuCUG---CCU-CGC-GCuCACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.