miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31178 5' -56.3 NC_006560.1 + 76275 0.66 0.911781
Target:  5'- -cGCGuGACGGccgcccuGCGgGAGgcccucGCGGCCc -3'
miRNA:   3'- uaUGCuCUGCCu------CGCgCUCa-----CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 83345 0.75 0.411462
Target:  5'- -gGCGAGGa-GGGCGCGGGcgGCGGCCc -3'
miRNA:   3'- uaUGCUCUgcCUCGCGCUCa-CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 16301 0.75 0.42015
Target:  5'- -gGCGcGGCGGGGCGCGGGcccGCGcCCg -3'
miRNA:   3'- uaUGCuCUGCCUCGCGCUCa--CGCuGG- -5'
31178 5' -56.3 NC_006560.1 + 2263 0.75 0.437854
Target:  5'- -cGCGcAGGCGcGGUGCGAGUGCG-CCu -3'
miRNA:   3'- uaUGC-UCUGCcUCGCGCUCACGCuGG- -5'
31178 5' -56.3 NC_006560.1 + 147558 0.75 0.437854
Target:  5'- cAUGCG-GGCGGgcggggagagGGCGCGcacGGUGCGGCCc -3'
miRNA:   3'- -UAUGCuCUGCC----------UCGCGC---UCACGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 52531 0.74 0.455977
Target:  5'- -gGCgGAGGCGGgGGCGuCGAGcgGCGGCCu -3'
miRNA:   3'- uaUG-CUCUGCC-UCGC-GCUCa-CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 148956 0.74 0.483897
Target:  5'- -gACGGGGCGGGaCGCGguGGcGCGACCa -3'
miRNA:   3'- uaUGCUCUGCCUcGCGC--UCaCGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 74045 0.74 0.502958
Target:  5'- cUGCGGGAgcugcUGcAGCGgGGGUGCGACCu -3'
miRNA:   3'- uAUGCUCU-----GCcUCGCgCUCACGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 94503 0.74 0.502958
Target:  5'- -gGCG-GGCGcGAGcCGCGAGcGCGGCCc -3'
miRNA:   3'- uaUGCuCUGC-CUC-GCGCUCaCGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 16263 0.75 0.411462
Target:  5'- aAUGCGAGGCGGcGCGCGcGGaGaCGGCCg -3'
miRNA:   3'- -UAUGCUCUGCCuCGCGC-UCaC-GCUGG- -5'
31178 5' -56.3 NC_006560.1 + 27633 0.76 0.402887
Target:  5'- -gGCGGGcGCGGccgGGCGCGGGgcGCGGCCg -3'
miRNA:   3'- uaUGCUC-UGCC---UCGCGCUCa-CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 14381 0.76 0.38608
Target:  5'- -gGCGAGGCGGGGCGaCGAc--CGACCg -3'
miRNA:   3'- uaUGCUCUGCCUCGC-GCUcacGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 81255 0.85 0.10648
Target:  5'- -cGCaGAGACGGAGCGCGAGgggcacacugGCGGCCc -3'
miRNA:   3'- uaUG-CUCUGCCUCGCGCUCa---------CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 9599 0.84 0.121281
Target:  5'- -gGCGAG-CGGAGCGCGGGgcGCGGCCc -3'
miRNA:   3'- uaUGCUCuGCCUCGCGCUCa-CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 11345 0.81 0.206381
Target:  5'- -gGCGAGGgGGGGCGguagaugcgggcCGGGUGCGGCCg -3'
miRNA:   3'- uaUGCUCUgCCUCGC------------GCUCACGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 118634 0.78 0.281945
Target:  5'- cGUACGAGAacuCGGuGGCGUGGG-GCGGCCg -3'
miRNA:   3'- -UAUGCUCU---GCC-UCGCGCUCaCGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 127273 0.78 0.288586
Target:  5'- -cACGAGGCucGGGGCGUccaggugcggGGGUGCGGCCa -3'
miRNA:   3'- uaUGCUCUG--CCUCGCG----------CUCACGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 9093 0.76 0.369742
Target:  5'- -gGCGAcGGCGGAGCGCGcGcGCGGCg -3'
miRNA:   3'- uaUGCU-CUGCCUCGCGCuCaCGCUGg -5'
31178 5' -56.3 NC_006560.1 + 34395 0.76 0.369742
Target:  5'- -cGCGGGGgGGGGgGUGGGgcgGCGGCCg -3'
miRNA:   3'- uaUGCUCUgCCUCgCGCUCa--CGCUGG- -5'
31178 5' -56.3 NC_006560.1 + 39957 0.76 0.369742
Target:  5'- -gGCGGGGCGGcGGCGCGGGcggcUGCGugUg -3'
miRNA:   3'- uaUGCUCUGCC-UCGCGCUC----ACGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.