Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3118 | 3' | -53.3 | NC_001493.1 | + | 10852 | 0.66 | 0.966042 |
Target: 5'- cGCGGccGGUU--CGCGAUCCGGgacUCuCCg -3' miRNA: 3'- -CGUUucCCAAacGCGCUAGGCC---AG-GG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 123296 | 0.66 | 0.969184 |
Target: 5'- cGCAcAGGGagagccgcgGUGCGucuAUCCgagcGGUCCCg -3' miRNA: 3'- -CGUuUCCCaaa------CGCGC---UAGG----CCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 7742 | 0.66 | 0.969184 |
Target: 5'- cGCAcAGGGagagccgcgGUGCGucuAUCCgagcGGUCCCg -3' miRNA: 3'- -CGUuUCCCaaa------CGCGC---UAGG----CCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 19986 | 0.67 | 0.945606 |
Target: 5'- -gAGAGuGG-UUGCGCaccauGAacaacccgcucuggUCCGGUCCCg -3' miRNA: 3'- cgUUUC-CCaAACGCG-----CU--------------AGGCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 69510 | 0.68 | 0.916071 |
Target: 5'- cCGAGGGGUaugGCGCGcgCCu-UCCCc -3' miRNA: 3'- cGUUUCCCAaa-CGCGCuaGGccAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 10770 | 0.69 | 0.885732 |
Target: 5'- cGCGGAGGacccggaucgagccGCGUGGUCaGGUCCCg -3' miRNA: 3'- -CGUUUCCcaaa----------CGCGCUAGgCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 129088 | 0.74 | 0.611971 |
Target: 5'- gGCAAGGGGg--GaGCGGUCCGGaaCCg -3' miRNA: 3'- -CGUUUCCCaaaCgCGCUAGGCCagGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 13533 | 0.74 | 0.611971 |
Target: 5'- gGCAAGGGGg--GaGCGGUCCGGaaCCg -3' miRNA: 3'- -CGUUUCCCaaaCgCGCUAGGCCagGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 23593 | 0.72 | 0.725385 |
Target: 5'- ----cGGGUUgUGCGCGGccUUCGGUCCg -3' miRNA: 3'- cguuuCCCAA-ACGCGCU--AGGCCAGGg -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 29554 | 0.72 | 0.755098 |
Target: 5'- uGCGAAGGGUggucCGCGAcagUCCGaGcgCCCg -3' miRNA: 3'- -CGUUUCCCAaac-GCGCU---AGGC-Ca-GGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 102451 | 0.72 | 0.764791 |
Target: 5'- uCGGGGGGU---CGCGAcggCCGGUCCUc -3' miRNA: 3'- cGUUUCCCAaacGCGCUa--GGCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 48035 | 0.71 | 0.774362 |
Target: 5'- uGCAcuGGGUccacGCGUGuuuUCCGGUaCCCu -3' miRNA: 3'- -CGUuuCCCAaa--CGCGCu--AGGCCA-GGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 73048 | 0.7 | 0.845426 |
Target: 5'- uGCAGAGGGUacacagGgGCGAgcucuccaucCCGG-CCCa -3' miRNA: 3'- -CGUUUCCCAaa----CgCGCUa---------GGCCaGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 126324 | 0.69 | 0.885732 |
Target: 5'- cGCGGAGGacccggaucgagccGCGUGGUCaGGUCCCg -3' miRNA: 3'- -CGUUUCCcaaa----------CGCGCUAGgCCAGGG- -5' |
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3118 | 3' | -53.3 | NC_001493.1 | + | 107603 | 0.66 | 0.972113 |
Target: 5'- cCGAAGGuug-GCgGCGuugacaCCGGUCCCg -3' miRNA: 3'- cGUUUCCcaaaCG-CGCua----GGCCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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