miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 5' -52 NC_001493.1 + 126484 0.66 0.977056
Target:  5'- aCAGCugUGGCCGauc--GCCGauGCCCa -3'
miRNA:   3'- aGUCGugGUCGGUgcuuuUGGU--UGGG- -5'
3118 5' -52 NC_001493.1 + 63033 0.66 0.977056
Target:  5'- cCGGUACCGugaccaCCACGAcgGCgaAGCCCa -3'
miRNA:   3'- aGUCGUGGUc-----GGUGCUuuUGg-UUGGG- -5'
3118 5' -52 NC_001493.1 + 19229 0.66 0.977056
Target:  5'- aUCGGCAUCgAGaUCAuCGAGAACCGuaACCa -3'
miRNA:   3'- -AGUCGUGG-UC-GGU-GCUUUUGGU--UGGg -5'
3118 5' -52 NC_001493.1 + 20502 0.66 0.977056
Target:  5'- -gGGCAUgAGCCAUGugauAGGCC--CCCg -3'
miRNA:   3'- agUCGUGgUCGGUGCu---UUUGGuuGGG- -5'
3118 5' -52 NC_001493.1 + 106484 0.66 0.974455
Target:  5'- gCGGcCGCCGacuCCGCGGugAAACCGguACCCg -3'
miRNA:   3'- aGUC-GUGGUc--GGUGCU--UUUGGU--UGGG- -5'
3118 5' -52 NC_001493.1 + 59783 0.66 0.974455
Target:  5'- aCGGgGCCgucgagGGCCAC---AACCAAUCCa -3'
miRNA:   3'- aGUCgUGG------UCGGUGcuuUUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 48103 0.66 0.974455
Target:  5'- gUCGGUACCgcguggagGGCCuCGGcgcacCCGACCCc -3'
miRNA:   3'- -AGUCGUGG--------UCGGuGCUuuu--GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 52661 0.66 0.974455
Target:  5'- aUCAGUuucuuuGCCAGCUugacaaacGCGGguuGAGCCAugcggucgauGCCCa -3'
miRNA:   3'- -AGUCG------UGGUCGG--------UGCU---UUUGGU----------UGGG- -5'
3118 5' -52 NC_001493.1 + 72173 0.66 0.974455
Target:  5'- uUCAGaCACgGGCC-CGA--GCaGGCCCa -3'
miRNA:   3'- -AGUC-GUGgUCGGuGCUuuUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 114156 0.66 0.974455
Target:  5'- --cGCGCCAaUCGCGggGACguACCa -3'
miRNA:   3'- aguCGUGGUcGGUGCuuUUGguUGGg -5'
3118 5' -52 NC_001493.1 + 44293 0.66 0.974455
Target:  5'- aUAGC-CguGCCACcaucuCCGGCCCg -3'
miRNA:   3'- aGUCGuGguCGGUGcuuuuGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 99981 0.66 0.974184
Target:  5'- gCAGCGauacuauCCaaGGCCAUGggGAuCCAGgCCa -3'
miRNA:   3'- aGUCGU-------GG--UCGGUGCuuUU-GGUUgGG- -5'
3118 5' -52 NC_001493.1 + 74232 0.66 0.973357
Target:  5'- aUUAGCGCCAugaaguucagguuuGUCACGAggaAAACCAcaaucucAUCCg -3'
miRNA:   3'- -AGUCGUGGU--------------CGGUGCU---UUUGGU-------UGGG- -5'
3118 5' -52 NC_001493.1 + 38748 0.66 0.971647
Target:  5'- cCAGCuguCUGGUCGCGAccAUCGACuCCa -3'
miRNA:   3'- aGUCGu--GGUCGGUGCUuuUGGUUG-GG- -5'
3118 5' -52 NC_001493.1 + 34185 0.66 0.971647
Target:  5'- cUCcGCAUaGGCCGCGucc-UCAACCCg -3'
miRNA:   3'- -AGuCGUGgUCGGUGCuuuuGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 43435 0.66 0.971647
Target:  5'- gCAGUACaCGaCCACGggGcGCCAugaaaugaGCCCa -3'
miRNA:   3'- aGUCGUG-GUcGGUGCuuU-UGGU--------UGGG- -5'
3118 5' -52 NC_001493.1 + 50014 0.66 0.971647
Target:  5'- aCAGCGCCuGUCucuCGugGACCAuCUCa -3'
miRNA:   3'- aGUCGUGGuCGGu--GCuuUUGGUuGGG- -5'
3118 5' -52 NC_001493.1 + 60192 0.66 0.971647
Target:  5'- aUCGaaGCCcGCCGCGAAcuAUCAACCUc -3'
miRNA:   3'- -AGUcgUGGuCGGUGCUUu-UGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 112530 0.66 0.971647
Target:  5'- aUCAGUACCGuucGCaCGcCGAGuccuGCCAGCgCCu -3'
miRNA:   3'- -AGUCGUGGU---CG-GU-GCUUu---UGGUUG-GG- -5'
3118 5' -52 NC_001493.1 + 133773 0.67 0.968623
Target:  5'- gCGGCACCcaGGCCccCGAccgcccGGGCguGCCCa -3'
miRNA:   3'- aGUCGUGG--UCGGu-GCU------UUUGguUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.