Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31185 | 5' | -60.3 | NC_006560.1 | + | 69452 | 0.68 | 0.559619 |
Target: 5'- -cCGCGGGGcuGGCgGGggGCGUccugagGCAGa -3' miRNA: 3'- aaGCGCCCC--UCGaCCaaCGCGa-----CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 45236 | 0.68 | 0.559619 |
Target: 5'- -aCGCGGGaGGGCcggGGggGCGuCUGUGGc -3' miRNA: 3'- aaGCGCCC-CUCGa--CCaaCGC-GACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 128337 | 0.68 | 0.54968 |
Target: 5'- gUUCuuCGGGGAGCUGGagGCGCgccugGCc- -3' miRNA: 3'- -AAGc-GCCCCUCGACCaaCGCGa----CGuc -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 114838 | 0.68 | 0.54968 |
Target: 5'- -cUGCGGGG-GCUG---GCGCUGUAGc -3' miRNA: 3'- aaGCGCCCCuCGACcaaCGCGACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 72370 | 0.68 | 0.54968 |
Target: 5'- cUCGCGGGGGcgccGCUG---GCGCUGCc- -3' miRNA: 3'- aAGCGCCCCU----CGACcaaCGCGACGuc -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 114341 | 0.68 | 0.54968 |
Target: 5'- -cCGCGGGGgcgcgcGGCcGGggGCGCguacGCGGg -3' miRNA: 3'- aaGCGCCCC------UCGaCCaaCGCGa---CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 27388 | 0.68 | 0.540783 |
Target: 5'- -gCGCGGGGGGCcGGgcccucccgcggcgGCGCgcgcGCGGg -3' miRNA: 3'- aaGCGCCCCUCGaCCaa------------CGCGa---CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 3444 | 0.68 | 0.539797 |
Target: 5'- -cCGCGGGG-GCgaGGagcucUUGCGCuUGCGGg -3' miRNA: 3'- aaGCGCCCCuCGa-CC-----AACGCG-ACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 99300 | 0.69 | 0.510533 |
Target: 5'- gUCG-GGGGAGgUGGUgggGCGCggggGCGu -3' miRNA: 3'- aAGCgCCCCUCgACCAa--CGCGa---CGUc -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 33637 | 0.69 | 0.510533 |
Target: 5'- --gGCGGGGGGCgccGGggGCgGCcGCGGg -3' miRNA: 3'- aagCGCCCCUCGa--CCaaCG-CGaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 147291 | 0.69 | 0.481951 |
Target: 5'- --gGCGGGGGGCucUGGcggGCGCcggGCGGa -3' miRNA: 3'- aagCGCCCCUCG--ACCaa-CGCGa--CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 25980 | 0.69 | 0.480073 |
Target: 5'- -cCGCGGGGGGCgagggccgcgggGGgagggGCGCcgUGCGGg -3' miRNA: 3'- aaGCGCCCCUCGa-----------CCaa---CGCG--ACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 147385 | 0.69 | 0.463334 |
Target: 5'- -gCGgGGGGGGCggagGGgaGCGCgggcgGCAGc -3' miRNA: 3'- aaGCgCCCCUCGa---CCaaCGCGa----CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 146463 | 0.7 | 0.436134 |
Target: 5'- --gGCGGaGGAGCgGGggGCGgaGCGGc -3' miRNA: 3'- aagCGCC-CCUCGaCCaaCGCgaCGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 34462 | 0.7 | 0.427274 |
Target: 5'- gUCGCGGGGGGCguucgcGGgcGUG-UGCGGg -3' miRNA: 3'- aAGCGCCCCUCGa-----CCaaCGCgACGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 20553 | 0.7 | 0.418522 |
Target: 5'- --gGCGGGGGGCUGGgguuCGCcgagGCGGa -3' miRNA: 3'- aagCGCCCCUCGACCaac-GCGa---CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 131377 | 0.71 | 0.392931 |
Target: 5'- -gCGCGGGGGGCgcGGUgcuggcggGCGCUggccGCGGa -3' miRNA: 3'- aaGCGCCCCUCGa-CCAa-------CGCGA----CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 33396 | 0.71 | 0.392931 |
Target: 5'- --gGCGGGGAGagGGggGCGCggGCGGg -3' miRNA: 3'- aagCGCCCCUCgaCCaaCGCGa-CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 26495 | 0.71 | 0.392931 |
Target: 5'- --gGCGGGGGGC-GGgcGCGCgaggggGCGGg -3' miRNA: 3'- aagCGCCCCUCGaCCaaCGCGa-----CGUC- -5' |
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31185 | 5' | -60.3 | NC_006560.1 | + | 133541 | 0.72 | 0.352605 |
Target: 5'- --gGCGGGGAGCcGGcgGCGC-GCGGc -3' miRNA: 3'- aagCGCCCCUCGaCCaaCGCGaCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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