miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 3' -61.6 NC_006560.1 + 142703 0.66 0.64398
Target:  5'- -gCGCCCgGCCGgcCGCGGC-CcCGAGg -3'
miRNA:   3'- uaGUGGGgCGGCa-GCGUCGcGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 141748 0.66 0.642989
Target:  5'- --aGCCCCGCCcccgCGCccgcguuGGCGCgcggCGAGa -3'
miRNA:   3'- uagUGGGGCGGca--GCG-------UCGCGa---GCUC- -5'
31186 3' -61.6 NC_006560.1 + 184 0.66 0.640016
Target:  5'- --gGCCCCGCCGgcguuuuuuuccgCGCGcGCGCcgccgCGGGa -3'
miRNA:   3'- uagUGGGGCGGCa------------GCGU-CGCGa----GCUC- -5'
31186 3' -61.6 NC_006560.1 + 150513 0.66 0.640016
Target:  5'- --gGCCCCGCCGgcguuuuuuuccgCGCGcGCGCcgccgCGGGa -3'
miRNA:   3'- uagUGGGGCGGCa------------GCGU-CGCGa----GCUC- -5'
31186 3' -61.6 NC_006560.1 + 26132 0.66 0.634069
Target:  5'- --gGCCCCGCCGggGCuGCGUggGGGc -3'
miRNA:   3'- uagUGGGGCGGCagCGuCGCGagCUC- -5'
31186 3' -61.6 NC_006560.1 + 123906 0.66 0.634069
Target:  5'- -cCGCCgcaaCGCCGUCGCcccGCGCU-GAGc -3'
miRNA:   3'- uaGUGGg---GCGGCAGCGu--CGCGAgCUC- -5'
31186 3' -61.6 NC_006560.1 + 665 0.66 0.634069
Target:  5'- -gCACCCCGgCGcgccCGCGGCGCgggcucgucgCGGGc -3'
miRNA:   3'- uaGUGGGGCgGCa---GCGUCGCGa---------GCUC- -5'
31186 3' -61.6 NC_006560.1 + 120022 0.66 0.634069
Target:  5'- --gACCCCGgCGcCG-AGCGcCUCGAGa -3'
miRNA:   3'- uagUGGGGCgGCaGCgUCGC-GAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 24687 0.66 0.634069
Target:  5'- -cCGCCUCGUCGUCGUGGacgccgugcCGCcCGAGg -3'
miRNA:   3'- uaGUGGGGCGGCAGCGUC---------GCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 119305 0.66 0.632087
Target:  5'- -aCGCCCCGCCGcccaaugccgccCGCAGgGUcugCGAGc -3'
miRNA:   3'- uaGUGGGGCGGCa-----------GCGUCgCGa--GCUC- -5'
31186 3' -61.6 NC_006560.1 + 131614 0.66 0.624157
Target:  5'- --gGCgCCGCCGgcccgGCGGCGgUCGAGc -3'
miRNA:   3'- uagUGgGGCGGCag---CGUCGCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 103839 0.66 0.624157
Target:  5'- -cCACCaCCGCCGcCGCguuugcggcGGCGCUgGGc -3'
miRNA:   3'- uaGUGG-GGCGGCaGCG---------UCGCGAgCUc -5'
31186 3' -61.6 NC_006560.1 + 52241 0.66 0.624157
Target:  5'- cUgGCCCCgGCCGgCGCGGCGCa---- -3'
miRNA:   3'- uAgUGGGG-CGGCaGCGUCGCGagcuc -5'
31186 3' -61.6 NC_006560.1 + 75039 0.67 0.614251
Target:  5'- cGUCGCCCuCGCCGacagCGCcGCcgGCUaCGAGc -3'
miRNA:   3'- -UAGUGGG-GCGGCa---GCGuCG--CGA-GCUC- -5'
31186 3' -61.6 NC_006560.1 + 104053 0.67 0.614251
Target:  5'- cGUCACCgaggCCGCCGUCGC-GC-CUCa-- -3'
miRNA:   3'- -UAGUGG----GGCGGCAGCGuCGcGAGcuc -5'
31186 3' -61.6 NC_006560.1 + 91567 0.67 0.614251
Target:  5'- -cCugCCCGCUGcUGCAGCugcugagucgccGCUCGAa -3'
miRNA:   3'- uaGugGGGCGGCaGCGUCG------------CGAGCUc -5'
31186 3' -61.6 NC_006560.1 + 77425 0.67 0.594483
Target:  5'- -gCGCCCggcgcUGCCGUCcgaGGgGCUCGAGg -3'
miRNA:   3'- uaGUGGG-----GCGGCAGcg-UCgCGAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 137200 0.67 0.592511
Target:  5'- --gGCCCCGCCGgcggccggggaGCgGGCGUUCGAc -3'
miRNA:   3'- uagUGGGGCGGCag---------CG-UCGCGAGCUc -5'
31186 3' -61.6 NC_006560.1 + 31359 0.67 0.584634
Target:  5'- -cCGCCCCGCCGagCGgGG-GC-CGAGg -3'
miRNA:   3'- uaGUGGGGCGGCa-GCgUCgCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 24054 0.67 0.584634
Target:  5'- -cCGCCCgCGCCcccggccCGCGGCGCUCa-- -3'
miRNA:   3'- uaGUGGG-GCGGca-----GCGUCGCGAGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.