miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 5' -60.7 NC_006560.1 + 146956 0.66 0.601737
Target:  5'- cGUCagGGCCGGgGGCcgggccugggcggGUGGGCGGGGc -3'
miRNA:   3'- -UAGaaCCGGUCgUCG-------------CGCCCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 37531 0.67 0.592585
Target:  5'- ----cGGCuCGGCcGCGCGGGCGGc-- -3'
miRNA:   3'- uagaaCCG-GUCGuCGCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 147273 0.67 0.592585
Target:  5'- cUCUggcGGCCGG-GGC-CGGGCGGGGGg -3'
miRNA:   3'- uAGAa--CCGGUCgUCGcGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 3460 0.67 0.592585
Target:  5'- cUCUUGcGCUugcgGGCcGCGCGGGCGGc-- -3'
miRNA:   3'- uAGAAC-CGG----UCGuCGCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 88698 0.67 0.589539
Target:  5'- ----cGGCCGGCGGCGgcagagcgccgcucCGcGGCGAGGu -3'
miRNA:   3'- uagaaCCGGUCGUCGC--------------GC-CCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 33379 0.67 0.582443
Target:  5'- -gCggGGCCgcggagaggGGCggggagaggggGGCGCGGGCGGGGAg -3'
miRNA:   3'- uaGaaCCGG---------UCG-----------UCGCGCCCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 5079 0.67 0.582443
Target:  5'- cGUCgccGGCguGCGGCGCGccgcccggggucGGCGGGGg -3'
miRNA:   3'- -UAGaa-CCGguCGUCGCGC------------CCGCUCUu -5'
31186 5' -60.7 NC_006560.1 + 5488 0.67 0.572337
Target:  5'- gGUCgcggcgagGGUCGGCGGCGguCGcGGCGAGGGu -3'
miRNA:   3'- -UAGaa------CCGGUCGUCGC--GC-CCGCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 65962 0.67 0.572337
Target:  5'- ----aGGCgGGCGGCGCGGuGCGGc-- -3'
miRNA:   3'- uagaaCCGgUCGUCGCGCC-CGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 146527 0.67 0.562273
Target:  5'- ----gGGCCGGCgcgucggggGGCGCGGGCagcGAGGc -3'
miRNA:   3'- uagaaCCGGUCG---------UCGCGCCCG---CUCUu -5'
31186 5' -60.7 NC_006560.1 + 104775 0.67 0.562273
Target:  5'- ----cGGgCGGgGGCGCGGGgGGGAGc -3'
miRNA:   3'- uagaaCCgGUCgUCGCGCCCgCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 3216 0.67 0.562273
Target:  5'- cUCgaGGgCGGCGGCgGCGGGCGGc-- -3'
miRNA:   3'- uAGaaCCgGUCGUCG-CGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 2301 0.67 0.551259
Target:  5'- aGUCgggcGcGCCGGCGgcggccgccucgcGCGCGGGCGAGu- -3'
miRNA:   3'- -UAGaa--C-CGGUCGU-------------CGCGCCCGCUCuu -5'
31186 5' -60.7 NC_006560.1 + 54639 0.67 0.542297
Target:  5'- -gCUUGGCgaCGGC-GCGCGGGaUGAGGGu -3'
miRNA:   3'- uaGAACCG--GUCGuCGCGCCC-GCUCUU- -5'
31186 5' -60.7 NC_006560.1 + 133548 0.67 0.542297
Target:  5'- -----aGCCGGCGGCGCGcGGCGuGGc -3'
miRNA:   3'- uagaacCGGUCGUCGCGC-CCGCuCUu -5'
31186 5' -60.7 NC_006560.1 + 106430 0.67 0.542297
Target:  5'- ---cUGGCCgcggaGGCGGuCGCGGGCGAc-- -3'
miRNA:   3'- uagaACCGG-----UCGUC-GCGCCCGCUcuu -5'
31186 5' -60.7 NC_006560.1 + 4155 0.68 0.532396
Target:  5'- cUCaUGGCCacggcggcGGCGGCGUGGGCcAGGc -3'
miRNA:   3'- uAGaACCGG--------UCGUCGCGCCCGcUCUu -5'
31186 5' -60.7 NC_006560.1 + 34515 0.68 0.532396
Target:  5'- ----aGGCCGGCAcggggcGCGCGGGgGcAGAGg -3'
miRNA:   3'- uagaaCCGGUCGU------CGCGCCCgC-UCUU- -5'
31186 5' -60.7 NC_006560.1 + 82772 0.68 0.532396
Target:  5'- gGUCgggGGcCCGGCGcccgcGCGCGGGCGcgcGGGAg -3'
miRNA:   3'- -UAGaa-CC-GGUCGU-----CGCGCCCGC---UCUU- -5'
31186 5' -60.7 NC_006560.1 + 4873 0.68 0.532396
Target:  5'- cGUCgacGGCggCGGCGGCGCcGGCGGGGg -3'
miRNA:   3'- -UAGaa-CCG--GUCGUCGCGcCCGCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.