miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31195 5' -56.1 NC_006560.1 + 119479 0.66 0.886063
Target:  5'- cCCGcGCGCucguCCAGCGAuucuGCCGGGAGGu -3'
miRNA:   3'- -GGU-CGUGuc--GGUCGCUc---CGGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 131157 0.66 0.886063
Target:  5'- cCCcGCGCGGCUcugGGCGGcGGCCGccgcGggGGc -3'
miRNA:   3'- -GGuCGUGUCGG---UCGCU-CCGGU----CuuUC- -5'
31195 5' -56.1 NC_006560.1 + 3808 0.66 0.886063
Target:  5'- cCgGGCACGG-CGGCGAGGUCGc---- -3'
miRNA:   3'- -GgUCGUGUCgGUCGCUCCGGUcuuuc -5'
31195 5' -56.1 NC_006560.1 + 18027 0.66 0.886063
Target:  5'- gCCcGCgACGGCUAGCGcGGCCGccGGGa -3'
miRNA:   3'- -GGuCG-UGUCGGUCGCuCCGGUcuUUC- -5'
31195 5' -56.1 NC_006560.1 + 64571 0.66 0.885368
Target:  5'- aCCAGCauccccaGCAGCCGGUacaGGcGGUCGGAGc- -3'
miRNA:   3'- -GGUCG-------UGUCGGUCG---CU-CCGGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 135982 0.66 0.879014
Target:  5'- cCCGGCGCG--CGGUGGcGGCCGGggGc -3'
miRNA:   3'- -GGUCGUGUcgGUCGCU-CCGGUCuuUc -5'
31195 5' -56.1 NC_006560.1 + 30016 0.66 0.879014
Target:  5'- aCCcGCGCAcGCgCGcCGAGGCCgAGGAGGc -3'
miRNA:   3'- -GGuCGUGU-CG-GUcGCUCCGG-UCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 4164 0.66 0.879014
Target:  5'- aCGGCgGCGG-CGGCGuGGGCCAGGc-- -3'
miRNA:   3'- gGUCG-UGUCgGUCGC-UCCGGUCUuuc -5'
31195 5' -56.1 NC_006560.1 + 124142 0.66 0.879014
Target:  5'- gCGGCGcCGGCgGGgGAGGCC-GAGc- -3'
miRNA:   3'- gGUCGU-GUCGgUCgCUCCGGuCUUuc -5'
31195 5' -56.1 NC_006560.1 + 15443 0.66 0.879014
Target:  5'- cCCGGCGCGcGUUcGCGccgcccGGGCCAGggGc -3'
miRNA:   3'- -GGUCGUGU-CGGuCGC------UCCGGUCuuUc -5'
31195 5' -56.1 NC_006560.1 + 78074 0.66 0.879014
Target:  5'- gCGGCGCGGCC-GCGGcGCuCGGggGc -3'
miRNA:   3'- gGUCGUGUCGGuCGCUcCG-GUCuuUc -5'
31195 5' -56.1 NC_006560.1 + 44291 0.66 0.879014
Target:  5'- aCGGCACAcGCCucaccgcGCGAuGGCCGGu--- -3'
miRNA:   3'- gGUCGUGU-CGGu------CGCU-CCGGUCuuuc -5'
31195 5' -56.1 NC_006560.1 + 130310 0.66 0.879014
Target:  5'- gCCGGCGCGGUggcggCGGCGcGGGCCGc---- -3'
miRNA:   3'- -GGUCGUGUCG-----GUCGC-UCCGGUcuuuc -5'
31195 5' -56.1 NC_006560.1 + 26848 0.66 0.876856
Target:  5'- -gGGCGCGGCCggccgccgccccccGGCGcccguGGCgGGAGAGc -3'
miRNA:   3'- ggUCGUGUCGG--------------UCGCu----CCGgUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 91653 0.66 0.871743
Target:  5'- gCCAGC-CAGUCGGUGgaGGGCCGc---- -3'
miRNA:   3'- -GGUCGuGUCGGUCGC--UCCGGUcuuuc -5'
31195 5' -56.1 NC_006560.1 + 25180 0.66 0.871743
Target:  5'- aCC-GCGCGGCCGcGCGcgccGGGCCcGAGGc -3'
miRNA:   3'- -GGuCGUGUCGGU-CGC----UCCGGuCUUUc -5'
31195 5' -56.1 NC_006560.1 + 17879 0.66 0.871743
Target:  5'- --cGCGcCAGCCAGCGGGcGCCccggcGGAGc- -3'
miRNA:   3'- gguCGU-GUCGGUCGCUC-CGG-----UCUUuc -5'
31195 5' -56.1 NC_006560.1 + 120500 0.66 0.871743
Target:  5'- aCCuGCACgagguggucgcgGGgCAGCGGGGCgCcGAGAGg -3'
miRNA:   3'- -GGuCGUG------------UCgGUCGCUCCG-GuCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 16670 0.66 0.871743
Target:  5'- gCGGUACuGCgAGaCGAGGCgGGAGc- -3'
miRNA:   3'- gGUCGUGuCGgUC-GCUCCGgUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 5649 0.66 0.871743
Target:  5'- gCGGCGCccGGCCGGCuccgccccGGGGCgCGGggGc -3'
miRNA:   3'- gGUCGUG--UCGGUCG--------CUCCG-GUCuuUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.