miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31197 5' -65.4 NC_006560.1 + 81965 0.66 0.515215
Target:  5'- cGCaGGGGcGGGuUGCUgGGcaggUAGGGCCCc -3'
miRNA:   3'- -CG-CCCC-CCC-ACGGgCUu---GUCCCGGGu -5'
31197 5' -65.4 NC_006560.1 + 10239 0.66 0.515215
Target:  5'- gGCGGcGGGG-GCgCGGgucGCGGcGGCCCc -3'
miRNA:   3'- -CGCCcCCCCaCGgGCU---UGUC-CCGGGu -5'
31197 5' -65.4 NC_006560.1 + 118359 0.66 0.515215
Target:  5'- cGCcGGGGcGGUGCUCGc---GGGCCUg -3'
miRNA:   3'- -CGcCCCC-CCACGGGCuuguCCCGGGu -5'
31197 5' -65.4 NC_006560.1 + 87035 0.66 0.506074
Target:  5'- uGCGGGuGaGGGUgauGCCggCGAGCcGGGCCaCGg -3'
miRNA:   3'- -CGCCC-C-CCCA---CGG--GCUUGuCCCGG-GU- -5'
31197 5' -65.4 NC_006560.1 + 27389 0.66 0.506074
Target:  5'- cGCGGGGGGccggGCCCucccGCGGcGGCgCGc -3'
miRNA:   3'- -CGCCCCCCca--CGGGcu--UGUC-CCGgGU- -5'
31197 5' -65.4 NC_006560.1 + 15122 0.66 0.506074
Target:  5'- cCGGGGGGucuucgugGUCgCGGGCucuGGGCCCc -3'
miRNA:   3'- cGCCCCCCca------CGG-GCUUGu--CCCGGGu -5'
31197 5' -65.4 NC_006560.1 + 88440 0.66 0.506074
Target:  5'- aCGGcGGGGGUcgcGCCCGcgGGCGcGcGGUCCAc -3'
miRNA:   3'- cGCC-CCCCCA---CGGGC--UUGU-C-CCGGGU- -5'
31197 5' -65.4 NC_006560.1 + 136000 0.66 0.506074
Target:  5'- cCGGGGGcGGgaccgaggacgGCCgGGGCGaguuccGGGCCCu -3'
miRNA:   3'- cGCCCCC-CCa----------CGGgCUUGU------CCCGGGu -5'
31197 5' -65.4 NC_006560.1 + 129458 0.66 0.506074
Target:  5'- gGCGGcGGGGG-GCUCGGAgggcaacuuCAGcGCCCc -3'
miRNA:   3'- -CGCC-CCCCCaCGGGCUU---------GUCcCGGGu -5'
31197 5' -65.4 NC_006560.1 + 135381 0.66 0.505164
Target:  5'- cGCGGGGGGGcggagGCCgCGGgggugucGCucGGCCa- -3'
miRNA:   3'- -CGCCCCCCCa----CGG-GCU-------UGucCCGGgu -5'
31197 5' -65.4 NC_006560.1 + 12793 0.66 0.488006
Target:  5'- cGCGGGGaGGGa-CCCGucggcCGGGGgCCGc -3'
miRNA:   3'- -CGCCCC-CCCacGGGCuu---GUCCCgGGU- -5'
31197 5' -65.4 NC_006560.1 + 124575 0.66 0.488006
Target:  5'- uGCGGcGGGGGcugacgacgGCCuCGacgcucaaGugGGGGCCCc -3'
miRNA:   3'- -CGCC-CCCCCa--------CGG-GC--------UugUCCCGGGu -5'
31197 5' -65.4 NC_006560.1 + 93989 0.66 0.488006
Target:  5'- uCGGGGaGGGgGCCgGGGCGGGGgaCGu -3'
miRNA:   3'- cGCCCC-CCCaCGGgCUUGUCCCggGU- -5'
31197 5' -65.4 NC_006560.1 + 120069 0.66 0.488006
Target:  5'- cGCGGGGcccuaccuGGUGCCCGcggaggucccCGGGGaCCCc -3'
miRNA:   3'- -CGCCCCc-------CCACGGGCuu--------GUCCC-GGGu -5'
31197 5' -65.4 NC_006560.1 + 15713 0.66 0.479086
Target:  5'- cGCaGGGGcGGcggGCCgGcACGGGGCCg- -3'
miRNA:   3'- -CGcCCCC-CCa--CGGgCuUGUCCCGGgu -5'
31197 5' -65.4 NC_006560.1 + 137611 0.66 0.479086
Target:  5'- cGCGGaGGaGGUGCgCCGGcggcacgcggccGCGGGGCUg- -3'
miRNA:   3'- -CGCCcCC-CCACG-GGCU------------UGUCCCGGgu -5'
31197 5' -65.4 NC_006560.1 + 33831 0.66 0.479086
Target:  5'- uCGGcGGGGGUcgGCCgCGGGCgugGGGGCgCGc -3'
miRNA:   3'- cGCC-CCCCCA--CGG-GCUUG---UCCCGgGU- -5'
31197 5' -65.4 NC_006560.1 + 77670 0.66 0.479086
Target:  5'- aGCuGGGGuGGGcGCgCGGAgAGGGCgCGc -3'
miRNA:   3'- -CG-CCCC-CCCaCGgGCUUgUCCCGgGU- -5'
31197 5' -65.4 NC_006560.1 + 134210 0.66 0.478199
Target:  5'- cGCGGGcccgcGGGGUcggccccGCCCGccGCGcGGCCCGc -3'
miRNA:   3'- -CGCCC-----CCCCA-------CGGGCu-UGUcCCGGGU- -5'
31197 5' -65.4 NC_006560.1 + 58407 0.66 0.478199
Target:  5'- cCGGGGGccgcgucGGUGCuCCG---GGGGUCCAg -3'
miRNA:   3'- cGCCCCC-------CCACG-GGCuugUCCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.