miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31198 5' -56.2 NC_006560.1 + 103765 0.66 0.931601
Target:  5'- cCUUCGgcCUC-CGAGACGGgCGCCcgucGCGa -3'
miRNA:   3'- -GAAGCa-GAGcGCUCUGCC-GUGGc---UGC- -5'
31198 5' -56.2 NC_006560.1 + 85071 0.66 0.931601
Target:  5'- gUUUGUgCUCGUGGuGCGGCGCgGcGCGg -3'
miRNA:   3'- gAAGCA-GAGCGCUcUGCCGUGgC-UGC- -5'
31198 5' -56.2 NC_006560.1 + 133488 0.66 0.931601
Target:  5'- --gCGUCUacgggcgagCGCGAG-CGGCcgcGCCGGCc -3'
miRNA:   3'- gaaGCAGA---------GCGCUCuGCCG---UGGCUGc -5'
31198 5' -56.2 NC_006560.1 + 74882 0.66 0.931601
Target:  5'- --cCGUCUC-CGAGGCcaucaaCGCCGGCGg -3'
miRNA:   3'- gaaGCAGAGcGCUCUGcc----GUGGCUGC- -5'
31198 5' -56.2 NC_006560.1 + 74571 0.66 0.931601
Target:  5'- aCUUCGgggggCU-GCG-GACGGCcCCGGCc -3'
miRNA:   3'- -GAAGCa----GAgCGCuCUGCCGuGGCUGc -5'
31198 5' -56.2 NC_006560.1 + 11205 0.66 0.926465
Target:  5'- --cCGagaUCGCGGucagcGACGGCACCG-CGg -3'
miRNA:   3'- gaaGCag-AGCGCU-----CUGCCGUGGCuGC- -5'
31198 5' -56.2 NC_006560.1 + 75346 0.66 0.926465
Target:  5'- -gUgGUCgggGCGAcgcGGCGGCgcGCCGACGa -3'
miRNA:   3'- gaAgCAGag-CGCU---CUGCCG--UGGCUGC- -5'
31198 5' -56.2 NC_006560.1 + 15866 0.66 0.926465
Target:  5'- -gUCGUa-CGCGGcggcGugGGgGCCGGCGa -3'
miRNA:   3'- gaAGCAgaGCGCU----CugCCgUGGCUGC- -5'
31198 5' -56.2 NC_006560.1 + 95275 0.66 0.92488
Target:  5'- gCUUCGcggcgcgcgugcgcUUUCGCGAccuGACGGC-CgCGGCGg -3'
miRNA:   3'- -GAAGC--------------AGAGCGCU---CUGCCGuG-GCUGC- -5'
31198 5' -56.2 NC_006560.1 + 60044 0.66 0.921099
Target:  5'- uCUUCGUCaccgacCGCGggguGGACuGCACCGAgGc -3'
miRNA:   3'- -GAAGCAGa-----GCGC----UCUGcCGUGGCUgC- -5'
31198 5' -56.2 NC_006560.1 + 55803 0.66 0.919444
Target:  5'- -cUCGUCgccgcccucgaaccaGCGgaAGGCGGCGCCGuCGc -3'
miRNA:   3'- gaAGCAGag-------------CGC--UCUGCCGUGGCuGC- -5'
31198 5' -56.2 NC_006560.1 + 144348 0.66 0.915502
Target:  5'- --gCGgg-CGCGAGACGGCcgcgggGCCGcgGCGg -3'
miRNA:   3'- gaaGCagaGCGCUCUGCCG------UGGC--UGC- -5'
31198 5' -56.2 NC_006560.1 + 91926 0.66 0.914929
Target:  5'- --aCGcCUCG-GAGGCGGCcaagagccgcaucGCCGGCa -3'
miRNA:   3'- gaaGCaGAGCgCUCUGCCG-------------UGGCUGc -5'
31198 5' -56.2 NC_006560.1 + 108489 0.66 0.909674
Target:  5'- -gUCGUCgggCGUggccgccgggGGGAgGGCGgCCGGCGg -3'
miRNA:   3'- gaAGCAGa--GCG----------CUCUgCCGU-GGCUGC- -5'
31198 5' -56.2 NC_006560.1 + 39089 0.66 0.909674
Target:  5'- --aCGUCUCGCu-GACG-CGCuCGGCGg -3'
miRNA:   3'- gaaGCAGAGCGcuCUGCcGUG-GCUGC- -5'
31198 5' -56.2 NC_006560.1 + 117774 0.66 0.907882
Target:  5'- gUUCGUCUCgcuccccgucgccuGCGAcgcccGCGGCGCCuACGa -3'
miRNA:   3'- gAAGCAGAG--------------CGCUc----UGCCGUGGcUGC- -5'
31198 5' -56.2 NC_006560.1 + 108972 0.66 0.907882
Target:  5'- --gCGUC-CGCGgcguugacgacgucGGccuCGGCGCCGACGu -3'
miRNA:   3'- gaaGCAGaGCGC--------------UCu--GCCGUGGCUGC- -5'
31198 5' -56.2 NC_006560.1 + 39948 0.66 0.903619
Target:  5'- --cCGUCgguaggCGgGGcGGCGGCGCgGGCGg -3'
miRNA:   3'- gaaGCAGa-----GCgCU-CUGCCGUGgCUGC- -5'
31198 5' -56.2 NC_006560.1 + 123200 0.66 0.903619
Target:  5'- --cCGUCUCGCuGcGGCGGgccguccuCGCCGACu -3'
miRNA:   3'- gaaGCAGAGCG-CuCUGCC--------GUGGCUGc -5'
31198 5' -56.2 NC_006560.1 + 120060 0.66 0.903001
Target:  5'- gUUCGagCUCGCGGGGCccuaccuGGUGCCcGCGg -3'
miRNA:   3'- gAAGCa-GAGCGCUCUG-------CCGUGGcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.