miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31199 3' -53.2 NC_006560.1 + 94816 0.66 0.982246
Target:  5'- uGGugGACgcgcUCCUCGUCGGGgggcagGCGa -3'
miRNA:   3'- -CCugCUGaggaAGGGGUAGCUCa-----UGC- -5'
31199 3' -53.2 NC_006560.1 + 111045 0.66 0.982246
Target:  5'- gGGACGGa-CCgcaCCCCGUCGAGc--- -3'
miRNA:   3'- -CCUGCUgaGGaa-GGGGUAGCUCaugc -5'
31199 3' -53.2 NC_006560.1 + 20338 0.66 0.980164
Target:  5'- cGGACGcCUCCUcggCCUCGUCGu---CGa -3'
miRNA:   3'- -CCUGCuGAGGAa--GGGGUAGCucauGC- -5'
31199 3' -53.2 NC_006560.1 + 79286 0.66 0.980164
Target:  5'- cGACGACUCCgggUCgCCGcCGGGccCGg -3'
miRNA:   3'- cCUGCUGAGGa--AGgGGUaGCUCauGC- -5'
31199 3' -53.2 NC_006560.1 + 43822 0.66 0.975465
Target:  5'- uGGAUGGCgaagguggCC-UCCgCGUCGAggGUGCGg -3'
miRNA:   3'- -CCUGCUGa-------GGaAGGgGUAGCU--CAUGC- -5'
31199 3' -53.2 NC_006560.1 + 42942 0.66 0.972831
Target:  5'- cGGcgcCGGCUCCagCCCCG-CGGGgGCGu -3'
miRNA:   3'- -CCu--GCUGAGGaaGGGGUaGCUCaUGC- -5'
31199 3' -53.2 NC_006560.1 + 23710 0.66 0.972831
Target:  5'- cGGCGAcCUCCgcgUCCCCGgcggcgcCGAGgcCGc -3'
miRNA:   3'- cCUGCU-GAGGa--AGGGGUa------GCUCauGC- -5'
31199 3' -53.2 NC_006560.1 + 73446 0.66 0.972831
Target:  5'- cGGGCGACgCC--CCCCAcCGAGgucUACGc -3'
miRNA:   3'- -CCUGCUGaGGaaGGGGUaGCUC---AUGC- -5'
31199 3' -53.2 NC_006560.1 + 91842 0.67 0.968202
Target:  5'- aGGGCGACguggCgcgcgucaaccucggCUUCCCCAagGAGaUGCGc -3'
miRNA:   3'- -CCUGCUGa---G---------------GAAGGGGUagCUC-AUGC- -5'
31199 3' -53.2 NC_006560.1 + 106086 0.67 0.963715
Target:  5'- aGGCGGC-CCgguaUCCCCA-CGAGgacGCGg -3'
miRNA:   3'- cCUGCUGaGGa---AGGGGUaGCUCa--UGC- -5'
31199 3' -53.2 NC_006560.1 + 134462 0.67 0.962355
Target:  5'- cGGGCGGCcCCcgcgggcccgcggUCCCCGUCGuucuUGCGg -3'
miRNA:   3'- -CCUGCUGaGGa------------AGGGGUAGCuc--AUGC- -5'
31199 3' -53.2 NC_006560.1 + 41473 0.67 0.96025
Target:  5'- cGACGAC-CCg-CCCCAgcagcUCGAGcGCGa -3'
miRNA:   3'- cCUGCUGaGGaaGGGGU-----AGCUCaUGC- -5'
31199 3' -53.2 NC_006560.1 + 66136 0.67 0.96025
Target:  5'- aGGGcCGACUCCagCCCCcgCGGcgGCa -3'
miRNA:   3'- -CCU-GCUGAGGaaGGGGuaGCUcaUGc -5'
31199 3' -53.2 NC_006560.1 + 32152 0.67 0.96025
Target:  5'- cGGGCGGggCCgggcgUCCCCGgcgcCGAGgGCGg -3'
miRNA:   3'- -CCUGCUgaGGa----AGGGGUa---GCUCaUGC- -5'
31199 3' -53.2 NC_006560.1 + 118454 0.68 0.944132
Target:  5'- uGGGCGACgUCCUgacgcuggCCCCGgggagCGAGcGCc -3'
miRNA:   3'- -CCUGCUG-AGGAa-------GGGGUa----GCUCaUGc -5'
31199 3' -53.2 NC_006560.1 + 130832 0.68 0.93952
Target:  5'- uGACGGCgcgcgUCCUggugCCCCGgggcuaCGAGUACu -3'
miRNA:   3'- cCUGCUG-----AGGAa---GGGGUa-----GCUCAUGc -5'
31199 3' -53.2 NC_006560.1 + 98781 0.68 0.93952
Target:  5'- cGGGCGGCUUCggUCCCA-CGGGcUACc -3'
miRNA:   3'- -CCUGCUGAGGaaGGGGUaGCUC-AUGc -5'
31199 3' -53.2 NC_006560.1 + 97295 0.68 0.93467
Target:  5'- cGGGCGGCU---UCCUCAUCGcGUACc -3'
miRNA:   3'- -CCUGCUGAggaAGGGGUAGCuCAUGc -5'
31199 3' -53.2 NC_006560.1 + 127599 0.68 0.93467
Target:  5'- gGGGCGACcuggCCgagugggUCCCC--CGGGUACa -3'
miRNA:   3'- -CCUGCUGa---GGa------AGGGGuaGCUCAUGc -5'
31199 3' -53.2 NC_006560.1 + 5657 0.69 0.92425
Target:  5'- cGGcCGGCUCCg-CCCCGgggcgCGGGgGCGg -3'
miRNA:   3'- -CCuGCUGAGGaaGGGGUa----GCUCaUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.