Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31199 | 3' | -53.2 | NC_006560.1 | + | 39710 | 0.7 | 0.873106 |
Target: 5'- cGGAgGACUCCaucUCCUCGUCGuccgACGa -3' miRNA: 3'- -CCUgCUGAGGa--AGGGGUAGCuca-UGC- -5' |
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31199 | 3' | -53.2 | NC_006560.1 | + | 149344 | 0.71 | 0.858071 |
Target: 5'- cGGCGGCUCC-UCCCCGccgCGGGgaggagccggGCGg -3' miRNA: 3'- cCUGCUGAGGaAGGGGUa--GCUCa---------UGC- -5' |
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31199 | 3' | -53.2 | NC_006560.1 | + | 145060 | 0.71 | 0.833998 |
Target: 5'- cGGGCGGcCUCC-UCCCCugggCGGGgcCGg -3' miRNA: 3'- -CCUGCU-GAGGaAGGGGua--GCUCauGC- -5' |
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31199 | 3' | -53.2 | NC_006560.1 | + | 12100 | 0.72 | 0.771755 |
Target: 5'- uGGAacaGCUCCaccgCCCCGUCGuAGUACGc -3' miRNA: 3'- -CCUgc-UGAGGaa--GGGGUAGC-UCAUGC- -5' |
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31199 | 3' | -53.2 | NC_006560.1 | + | 95819 | 0.73 | 0.733244 |
Target: 5'- -uACGACUCCgacugCCCgcugguggccauCGUCGAGUGCGa -3' miRNA: 3'- ccUGCUGAGGaa---GGG------------GUAGCUCAUGC- -5' |
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31199 | 3' | -53.2 | NC_006560.1 | + | 26299 | 0.76 | 0.570802 |
Target: 5'- cGGGCGGCUUCUgCCCCGUCGGcGgccGCGu -3' miRNA: 3'- -CCUGCUGAGGAaGGGGUAGCU-Ca--UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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