miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31199 5' -58.8 NC_006560.1 + 15291 0.66 0.821153
Target:  5'- -gCcgGCGCGGC--GGCGGugGcCUCg -3'
miRNA:   3'- gaGuaCGCGCUGacCCGCCugCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 52330 0.66 0.821153
Target:  5'- gCUCGUcgGCGCGGCc--GUGGGCG-CCCu -3'
miRNA:   3'- -GAGUA--CGCGCUGaccCGCCUGCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 6123 0.66 0.821153
Target:  5'- cCUCAc-CGCGcCUGcGCGG-CGUCCCc -3'
miRNA:   3'- -GAGUacGCGCuGACcCGCCuGCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 83508 0.66 0.821153
Target:  5'- ----cGCGCGAggGGGCGGgccgcgggcGCGcgCCCg -3'
miRNA:   3'- gaguaCGCGCUgaCCCGCC---------UGCa-GGG- -5'
31199 5' -58.8 NC_006560.1 + 93671 0.66 0.812743
Target:  5'- gCUCcgGCGuCGGC--GGCGGACGaCgCCg -3'
miRNA:   3'- -GAGuaCGC-GCUGacCCGCCUGCaG-GG- -5'
31199 5' -58.8 NC_006560.1 + 63473 0.66 0.812743
Target:  5'- gCUCugcuggGCGuUGGCgGGGUGGACGaUCuCCg -3'
miRNA:   3'- -GAGua----CGC-GCUGaCCCGCCUGC-AG-GG- -5'
31199 5' -58.8 NC_006560.1 + 2064 0.66 0.812743
Target:  5'- -gCAcGCGCGGCgcgGcGGCGGG-GUCCg -3'
miRNA:   3'- gaGUaCGCGCUGa--C-CCGCCUgCAGGg -5'
31199 5' -58.8 NC_006560.1 + 34621 0.66 0.812743
Target:  5'- ----cGCGCGGCUcgggGGcGCGGAgGUCgCa -3'
miRNA:   3'- gaguaCGCGCUGA----CC-CGCCUgCAGgG- -5'
31199 5' -58.8 NC_006560.1 + 98229 0.66 0.812743
Target:  5'- gUCAUGgGC-AUcgUGGGCGGGguCGUCuCCg -3'
miRNA:   3'- gAGUACgCGcUG--ACCCGCCU--GCAG-GG- -5'
31199 5' -58.8 NC_006560.1 + 128235 0.66 0.812743
Target:  5'- cCUCca--GCGGCUGGGCccaGAgGUCCUg -3'
miRNA:   3'- -GAGuacgCGCUGACCCGc--CUgCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 16301 0.66 0.812743
Target:  5'- ----gGCGCGGCggGGcGCGGGCccgcgCCCg -3'
miRNA:   3'- gaguaCGCGCUGa-CC-CGCCUGca---GGG- -5'
31199 5' -58.8 NC_006560.1 + 85077 0.66 0.811894
Target:  5'- gCUCGUggugcgGCGCGGCgcgGaaagaacgacgacGGacaCGGACGUCCCg -3'
miRNA:   3'- -GAGUA------CGCGCUGa--C-------------CC---GCCUGCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 16025 0.66 0.804179
Target:  5'- ----aGCGCGACgGGGCGccggcaccccccGGCGUcgaCCCg -3'
miRNA:   3'- gaguaCGCGCUGaCCCGC------------CUGCA---GGG- -5'
31199 5' -58.8 NC_006560.1 + 25844 0.66 0.804179
Target:  5'- ----gGCGUGGCcGGGCGcGCG-CCCg -3'
miRNA:   3'- gaguaCGCGCUGaCCCGCcUGCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 80859 0.66 0.804179
Target:  5'- ----cGCGCgGGCUGGGCGGcggggGCGgCCa -3'
miRNA:   3'- gaguaCGCG-CUGACCCGCC-----UGCaGGg -5'
31199 5' -58.8 NC_006560.1 + 28163 0.66 0.795467
Target:  5'- uCUCGccUGCG-GucCUGGGgugaguCGGugGUCCCg -3'
miRNA:   3'- -GAGU--ACGCgCu-GACCC------GCCugCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 81553 0.67 0.790173
Target:  5'- gCUCGgccGCGCGACagaggaugcgccgcgUGcGGCcGGCGUCCUc -3'
miRNA:   3'- -GAGUa--CGCGCUG---------------AC-CCGcCUGCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 20893 0.67 0.786616
Target:  5'- gUCG-GCGCGGCguucccGGGCGGugGgCgCg -3'
miRNA:   3'- gAGUaCGCGCUGa-----CCCGCCugCaGgG- -5'
31199 5' -58.8 NC_006560.1 + 40311 0.67 0.786616
Target:  5'- ----cGCGC--UUGGGCGGGCGcggCCCc -3'
miRNA:   3'- gaguaCGCGcuGACCCGCCUGCa--GGG- -5'
31199 5' -58.8 NC_006560.1 + 55087 0.67 0.786616
Target:  5'- gCUUuUGUGCGGCcgGGGCGG-CG-CCg -3'
miRNA:   3'- -GAGuACGCGCUGa-CCCGCCuGCaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.