miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31199 5' -58.8 NC_006560.1 + 52330 0.66 0.821153
Target:  5'- gCUCGUcgGCGCGGCc--GUGGGCG-CCCu -3'
miRNA:   3'- -GAGUA--CGCGCUGaccCGCCUGCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 95067 0.71 0.524783
Target:  5'- -gCcgGCcCGgagaGCUGGGCGGACGUCgCg -3'
miRNA:   3'- gaGuaCGcGC----UGACCCGCCUGCAGgG- -5'
31199 5' -58.8 NC_006560.1 + 38317 0.71 0.524783
Target:  5'- uCUUuauUGCGUGugUGuGGCGGGCGagaacgCCCc -3'
miRNA:   3'- -GAGu--ACGCGCugAC-CCGCCUGCa-----GGG- -5'
31199 5' -58.8 NC_006560.1 + 91463 0.71 0.534381
Target:  5'- gCUCAUGCGCaACcuggucgagGGGCGGAacuucaaGUUCCg -3'
miRNA:   3'- -GAGUACGCGcUGa--------CCCGCCUg------CAGGG- -5'
31199 5' -58.8 NC_006560.1 + 99348 0.71 0.534381
Target:  5'- cCUCccacUGCGcCGGCUGGGCguacuggggcggGGGCG-CCCg -3'
miRNA:   3'- -GAGu---ACGC-GCUGACCCG------------CCUGCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 99605 0.71 0.534381
Target:  5'- -cCcgGCGCGGCgggGGGCGGcugGCgGUCCg -3'
miRNA:   3'- gaGuaCGCGCUGa--CCCGCC---UG-CAGGg -5'
31199 5' -58.8 NC_006560.1 + 3402 0.71 0.54017
Target:  5'- gCUCuucuUGCGCGcCggcGGGCGGGCGgcgggcgcgggcgCCCg -3'
miRNA:   3'- -GAGu---ACGCGCuGa--CCCGCCUGCa------------GGG- -5'
31199 5' -58.8 NC_006560.1 + 59448 0.7 0.563524
Target:  5'- --gGUGCGuCGGgaGGGCGGGCGgCCg -3'
miRNA:   3'- gagUACGC-GCUgaCCCGCCUGCaGGg -5'
31199 5' -58.8 NC_006560.1 + 23695 0.7 0.583188
Target:  5'- gCUCAUGCGC--CUGcGCGGcgaccuccGCGUCCCc -3'
miRNA:   3'- -GAGUACGCGcuGACcCGCC--------UGCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 51931 0.71 0.505789
Target:  5'- cCUCAUGgGCGACgagGaGGCGGccGCGcUCCg -3'
miRNA:   3'- -GAGUACgCGCUGa--C-CCGCC--UGC-AGGg -5'
31199 5' -58.8 NC_006560.1 + 50410 0.72 0.496403
Target:  5'- -cCggGCGCGGCggGGGCGGAgUGcCCCc -3'
miRNA:   3'- gaGuaCGCGCUGa-CCCGCCU-GCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 87877 0.72 0.496403
Target:  5'- ----gGCGCGGgUGGGgGGGCGcgccgUCCCg -3'
miRNA:   3'- gaguaCGCGCUgACCCgCCUGC-----AGGG- -5'
31199 5' -58.8 NC_006560.1 + 109730 0.77 0.256591
Target:  5'- -aUAUGaGCGGCcGGGCGGGgGUCCCa -3'
miRNA:   3'- gaGUACgCGCUGaCCCGCCUgCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 16383 0.76 0.287847
Target:  5'- -gCAUG-GCGGCgcGGGCGGGCGUCgCCu -3'
miRNA:   3'- gaGUACgCGCUGa-CCCGCCUGCAG-GG- -5'
31199 5' -58.8 NC_006560.1 + 12345 0.76 0.307998
Target:  5'- cCUCG-GgGCuGGCgGGGCGGGCGUCUCg -3'
miRNA:   3'- -GAGUaCgCG-CUGaCCCGCCUGCAGGG- -5'
31199 5' -58.8 NC_006560.1 + 139318 0.74 0.366909
Target:  5'- cCUCggGCGCGGgaGaGGCGGGCGcCUCg -3'
miRNA:   3'- -GAGuaCGCGCUgaC-CCGCCUGCaGGG- -5'
31199 5' -58.8 NC_006560.1 + 2572 0.73 0.41592
Target:  5'- gUCGcGCGCGGCgGGccaGCGGACGUCgCa -3'
miRNA:   3'- gAGUaCGCGCUGaCC---CGCCUGCAGgG- -5'
31199 5' -58.8 NC_006560.1 + 117974 0.73 0.433126
Target:  5'- -aCGUGUgGCGcCUGGGCGcGGCGgcgCCCg -3'
miRNA:   3'- gaGUACG-CGCuGACCCGC-CUGCa--GGG- -5'
31199 5' -58.8 NC_006560.1 + 146840 0.73 0.441882
Target:  5'- -gCGUGCuGCGGCggcgcgGGGCgGGGCGgcgCCCg -3'
miRNA:   3'- gaGUACG-CGCUGa-----CCCG-CCUGCa--GGG- -5'
31199 5' -58.8 NC_006560.1 + 88489 0.72 0.450738
Target:  5'- -gCGUGCGC--CUGGGCcagaaGGCGUCCCg -3'
miRNA:   3'- gaGUACGCGcuGACCCGc----CUGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.