miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
312 5' -60 AC_000010.1 + 9356 0.66 0.365963
Target:  5'- gACCG---UUUGCCCGUGCGCcgccGGCGUc -3'
miRNA:   3'- aUGGUcuuGGAUGGGCGCGCG----CCGCG- -5'
312 5' -60 AC_000010.1 + 17402 0.66 0.357353
Target:  5'- cGCgGGAugCgacGCCacagGCG-GCGGCGCg -3'
miRNA:   3'- aUGgUCUugGa--UGGg---CGCgCGCCGCG- -5'
312 5' -60 AC_000010.1 + 5534 0.66 0.357353
Target:  5'- aACCAucuGcGCCU-CCUGCgGCGCGGaUGCa -3'
miRNA:   3'- aUGGU---CuUGGAuGGGCG-CGCGCC-GCG- -5'
312 5' -60 AC_000010.1 + 9887 0.66 0.348887
Target:  5'- cGCguGAGCCcaaACCCGCGCaUGG-GCu -3'
miRNA:   3'- aUGguCUUGGa--UGGGCGCGcGCCgCG- -5'
312 5' -60 AC_000010.1 + 16088 0.66 0.340564
Target:  5'- cUGCCAGcacuggcACCUGaagCCGCGCGUcuGGCuGCu -3'
miRNA:   3'- -AUGGUCu------UGGAUg--GGCGCGCG--CCG-CG- -5'
312 5' -60 AC_000010.1 + 15392 0.66 0.324353
Target:  5'- aACCAGAuCCUcAUCCGCcCGCcaGCGCc -3'
miRNA:   3'- aUGGUCUuGGA-UGGGCGcGCGc-CGCG- -5'
312 5' -60 AC_000010.1 + 8528 0.67 0.308723
Target:  5'- cGCCGGGGCCcgAgCCGCcucuacCGCcaGGCGCg -3'
miRNA:   3'- aUGGUCUUGGa-UgGGCGc-----GCG--CCGCG- -5'
312 5' -60 AC_000010.1 + 12088 0.67 0.293675
Target:  5'- aGCCAccuCCUGauCCCgcaauGCGgGCGGCGCu -3'
miRNA:   3'- aUGGUcuuGGAU--GGG-----CGCgCGCCGCG- -5'
312 5' -60 AC_000010.1 + 16151 0.7 0.198706
Target:  5'- gGCCAGcGCgUGCCCGUGCGCaccCGUc -3'
miRNA:   3'- aUGGUCuUGgAUGGGCGCGCGcc-GCG- -5'
312 5' -60 AC_000010.1 + 12340 0.73 0.108075
Target:  5'- aGCCAGGACCUuCUCGUGgGUGGgGUu -3'
miRNA:   3'- aUGGUCUUGGAuGGGCGCgCGCCgCG- -5'
312 5' -60 AC_000010.1 + 8578 1.08 0.000202
Target:  5'- gUACCAGAACCUACCCGCGCGCGGCGCc -3'
miRNA:   3'- -AUGGUCUUGGAUGGGCGCGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.