miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 3' -63.5 NC_001493.1 + 61422 0.66 0.55895
Target:  5'- gGCGCuucuugGGUUGCUUugguuucuucggGGUUACGGGCUCGGg -3'
miRNA:   3'- -CGCG------CCAGCGGG------------UCGGUGCCUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 42102 0.67 0.549495
Target:  5'- aGUGCGGcgccguggacUCGCCCGGCUcgguCGuGACCaUGGc -3'
miRNA:   3'- -CGCGCC----------AGCGGGUCGGu---GC-CUGG-GCC- -5'
3120 3' -63.5 NC_001493.1 + 62655 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62613 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62571 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62529 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 62487 0.67 0.539153
Target:  5'- cCGCGGgcuUCGCCgucguggUGGUCACGGugCCGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 32634 0.67 0.521451
Target:  5'- cGCGCGuGcCGauCCCGGUCGCGGACUa-- -3'
miRNA:   3'- -CGCGC-CaGC--GGGUCGGUGCCUGGgcc -5'
3120 3' -63.5 NC_001493.1 + 108867 0.67 0.512225
Target:  5'- uGUGCGaccaUCGCCU-GCgAUGGACCCGa -3'
miRNA:   3'- -CGCGCc---AGCGGGuCGgUGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 18060 0.67 0.512225
Target:  5'- cGgGCGGUCGgg-GGCCugGGugCCGc -3'
miRNA:   3'- -CgCGCCAGCgggUCGGugCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 133615 0.67 0.512225
Target:  5'- cGgGCGGUCGgg-GGCCugGGugCCGc -3'
miRNA:   3'- -CgCGCCAGCgggUCGGugCCugGGCc -5'
3120 3' -63.5 NC_001493.1 + 102056 0.67 0.503067
Target:  5'- cCGCGaGcgCGCUcauCAGCCACGcGACCCuGGc -3'
miRNA:   3'- cGCGC-Ca-GCGG---GUCGGUGC-CUGGG-CC- -5'
3120 3' -63.5 NC_001493.1 + 36888 0.67 0.503067
Target:  5'- cCGCaGUCGUUCGGCCaggguuACGGACCgGa -3'
miRNA:   3'- cGCGcCAGCGGGUCGG------UGCCUGGgCc -5'
3120 3' -63.5 NC_001493.1 + 69473 0.68 0.479602
Target:  5'- -aGCGGgugcacuguacgggCGCgCCAGCCuCGGACUCGc -3'
miRNA:   3'- cgCGCCa-------------GCG-GGUCGGuGCCUGGGCc -5'
3120 3' -63.5 NC_001493.1 + 124834 0.68 0.449753
Target:  5'- aGCGCGGUCGCggggaugaccCCGcggcucccguuGaCCGCGcaaaaGACCCGGg -3'
miRNA:   3'- -CGCGCCAGCG----------GGU-----------C-GGUGC-----CUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 83881 0.68 0.449753
Target:  5'- cCGUGuUCGUCCGGCgCGCGGcgcucCCCGGu -3'
miRNA:   3'- cGCGCcAGCGGGUCG-GUGCCu----GGGCC- -5'
3120 3' -63.5 NC_001493.1 + 9280 0.68 0.449753
Target:  5'- aGCGCGGUCGCggggaugaccCCGcggcucccguuGaCCGCGcaaaaGACCCGGg -3'
miRNA:   3'- -CGCGCCAGCG----------GGU-----------C-GGUGC-----CUGGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62697 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62781 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5'
3120 3' -63.5 NC_001493.1 + 62942 0.68 0.440317
Target:  5'- cCGUGGgcuUCGCCgucguggUGGUCACGGugCCGGu -3'
miRNA:   3'- cGCGCC---AGCGG-------GUCGGUGCCugGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.