miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3120 5' -57.5 NC_001493.1 + 124700 0.67 0.81219
Target:  5'- cUCCCGGGGauggCgGCgAGGGGGGAgGCc- -3'
miRNA:   3'- -AGGGUUCCa---GgUG-UCCCUCCUgUGcc -5'
3120 5' -57.5 NC_001493.1 + 105888 0.67 0.81219
Target:  5'- --aCGAGGUCC-CGGGG-GGugAgGGu -3'
miRNA:   3'- aggGUUCCAGGuGUCCCuCCugUgCC- -5'
3120 5' -57.5 NC_001493.1 + 9145 0.67 0.81219
Target:  5'- cUCCCGGGGauggCgGCgAGGGGGGAgGCc- -3'
miRNA:   3'- -AGGGUUCCa---GgUG-UCCCUCCUgUGcc -5'
3120 5' -57.5 NC_001493.1 + 44245 0.67 0.81219
Target:  5'- aCCCGAuGGaucgcgCCGuauCGGGGGGGAUACcGGg -3'
miRNA:   3'- aGGGUU-CCa-----GGU---GUCCCUCCUGUG-CC- -5'
3120 5' -57.5 NC_001493.1 + 106729 0.67 0.806981
Target:  5'- gUUCgAAGGgggcauucugugaCGCGGGGGGGACcCGGg -3'
miRNA:   3'- -AGGgUUCCag-----------GUGUCCCUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 22015 0.67 0.794612
Target:  5'- aUCCgGAGGcaCCACgccgugucgAGGGAGGAUGUGGa -3'
miRNA:   3'- -AGGgUUCCa-GGUG---------UCCCUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 3231 0.67 0.794612
Target:  5'- gCCCGAGGUggagUCAgAGGcggacGAGGACcCGGa -3'
miRNA:   3'- aGGGUUCCA----GGUgUCC-----CUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 118785 0.67 0.794612
Target:  5'- gCCCGAGGUggagUCAgAGGcggacGAGGACcCGGa -3'
miRNA:   3'- aGGGUUCCA----GGUgUCC-----CUCCUGuGCC- -5'
3120 5' -57.5 NC_001493.1 + 7832 0.67 0.793717
Target:  5'- uUCCCcggggggAGGGUUaauCGGGGAGGuCACcGGg -3'
miRNA:   3'- -AGGG-------UUCCAGgu-GUCCCUCCuGUG-CC- -5'
3120 5' -57.5 NC_001493.1 + 61825 0.67 0.793717
Target:  5'- aUCCGAGGUUgugcccuaugaaaCACuuGaGAGGACGCGGa -3'
miRNA:   3'- aGGGUUCCAG-------------GUGucC-CUCCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 123386 0.67 0.793717
Target:  5'- uUCCCcggggggAGGGUUaauCGGGGAGGuCACcGGg -3'
miRNA:   3'- -AGGG-------UUCCAGgu-GUCCCUCCuGUG-CC- -5'
3120 5' -57.5 NC_001493.1 + 95477 0.67 0.776461
Target:  5'- aCCCGuucaacCCGauCGGGGAGGugACGGg -3'
miRNA:   3'- aGGGUucca--GGU--GUCCCUCCugUGCC- -5'
3120 5' -57.5 NC_001493.1 + 107582 0.67 0.776461
Target:  5'- -aCC--GGUCC-CGGGGGGGugGcCGGa -3'
miRNA:   3'- agGGuuCCAGGuGUCCCUCCugU-GCC- -5'
3120 5' -57.5 NC_001493.1 + 13701 0.67 0.776461
Target:  5'- -aCCGcGGUCCGggguaAGGGGGG-UACGGg -3'
miRNA:   3'- agGGUuCCAGGUg----UCCCUCCuGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 71006 0.67 0.77554
Target:  5'- gUUCC-AGGUgCACAGGGAuuuugcgGGacugaGCACGGa -3'
miRNA:   3'- -AGGGuUCCAgGUGUCCCU-------CC-----UGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 87128 0.68 0.767192
Target:  5'- cUCUC-AGGUCCGCAaccGGGGGcGCGCGc -3'
miRNA:   3'- -AGGGuUCCAGGUGU---CCCUCcUGUGCc -5'
3120 5' -57.5 NC_001493.1 + 90112 0.68 0.767192
Target:  5'- aUCUggGGUgCCACGGGGucGaGACGCGu -3'
miRNA:   3'- aGGGuuCCA-GGUGUCCCu-C-CUGUGCc -5'
3120 5' -57.5 NC_001493.1 + 26309 0.68 0.751171
Target:  5'- cCCUggGGUCCACcccccucucccauGGAcgcucucGGACACGGg -3'
miRNA:   3'- aGGGuuCCAGGUGuc-----------CCU-------CCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 39209 0.68 0.748311
Target:  5'- aCCCAGGuGga-ACgAGGGAgagGGACACGGa -3'
miRNA:   3'- aGGGUUC-CaggUG-UCCCU---CCUGUGCC- -5'
3120 5' -57.5 NC_001493.1 + 60509 0.68 0.745443
Target:  5'- uUCCCGAGGaucucuaugaucguUCCGgAGGG-GGACgauaucucgACGGu -3'
miRNA:   3'- -AGGGUUCC--------------AGGUgUCCCuCCUG---------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.