miRNA display CGI


Results 1 - 20 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31201 3' -69.7 NC_006560.1 + 2280 0.65 0.345008
Target:  5'- aGUGCGCCUCGCCgcggcggaagUCgggcgcgccggcgGCGGCCgCCUCg -3'
miRNA:   3'- cCGCGCGGGGCGG----------GG-------------CGUCGGgGGAG- -5'
31201 3' -69.7 NC_006560.1 + 23731 0.65 0.345008
Target:  5'- cGGCGCcgagGCCgCCGUCgCCGCcgugcgcgccgugGGCCUCgUCg -3'
miRNA:   3'- -CCGCG----CGG-GGCGG-GGCG-------------UCGGGGgAG- -5'
31201 3' -69.7 NC_006560.1 + 27790 0.65 0.343595
Target:  5'- cGcCGCGCCCgGCCgCCGUuccuucggcgcgcgGGgCCCUUCc -3'
miRNA:   3'- cC-GCGCGGGgCGG-GGCG--------------UCgGGGGAG- -5'
31201 3' -69.7 NC_006560.1 + 53657 0.66 0.338683
Target:  5'- gGGC-CGCccgggaCCCGUcgCCCGCcGCCCCCcCg -3'
miRNA:   3'- -CCGcGCG------GGGCG--GGGCGuCGGGGGaG- -5'
31201 3' -69.7 NC_006560.1 + 81413 0.66 0.338683
Target:  5'- gGGCGCGCgCCaccaCCCGCgggccggggcGGCCCCg-- -3'
miRNA:   3'- -CCGCGCGgGGcg--GGGCG----------UCGGGGgag -5'
31201 3' -69.7 NC_006560.1 + 112205 0.66 0.338683
Target:  5'- --aGCuCCCCgcggGCCCCGCcGCCCgCCUUc -3'
miRNA:   3'- ccgCGcGGGG----CGGGGCGuCGGG-GGAG- -5'
31201 3' -69.7 NC_006560.1 + 120188 0.66 0.338683
Target:  5'- aGGCGCugggcgagcuguGCCCC-CCCgGCAGCCgCg-- -3'
miRNA:   3'- -CCGCG------------CGGGGcGGGgCGUCGGgGgag -5'
31201 3' -69.7 NC_006560.1 + 130606 0.66 0.338683
Target:  5'- cGCGCGgCCgGCCgCGCGGCUggcgugggCCCg- -3'
miRNA:   3'- cCGCGCgGGgCGGgGCGUCGG--------GGGag -5'
31201 3' -69.7 NC_006560.1 + 130160 0.66 0.338683
Target:  5'- uGGCuGC-CCCCGaggaCCCGCGaccGCCUCCa- -3'
miRNA:   3'- -CCG-CGcGGGGCg---GGGCGU---CGGGGGag -5'
31201 3' -69.7 NC_006560.1 + 67831 0.66 0.338683
Target:  5'- gGGuCGCGUCCC-CCCCGacgcCAGCCCgggCCg- -3'
miRNA:   3'- -CC-GCGCGGGGcGGGGC----GUCGGG---GGag -5'
31201 3' -69.7 NC_006560.1 + 44244 0.66 0.338683
Target:  5'- uGCG-GCCCCGCgagcgaggccUCCGCGGCCaUCCg- -3'
miRNA:   3'- cCGCgCGGGGCG----------GGGCGUCGG-GGGag -5'
31201 3' -69.7 NC_006560.1 + 50279 0.66 0.338683
Target:  5'- cGGCGCGCCCCcggggguaCCUgggggcgguggaCGCgucggagauccuGGCCgCCCUCg -3'
miRNA:   3'- -CCGCGCGGGGc-------GGG------------GCG------------UCGG-GGGAG- -5'
31201 3' -69.7 NC_006560.1 + 114429 0.66 0.338683
Target:  5'- cGGCGCaCCCCuGCgCCGCcacGGCCaaCCCg- -3'
miRNA:   3'- -CCGCGcGGGG-CGgGGCG---UCGG--GGGag -5'
31201 3' -69.7 NC_006560.1 + 97393 0.66 0.338683
Target:  5'- gGGgGCGaCCCCGgggaggcggccaCCCCG-GGCCCCUcCg -3'
miRNA:   3'- -CCgCGC-GGGGC------------GGGGCgUCGGGGGaG- -5'
31201 3' -69.7 NC_006560.1 + 37327 0.66 0.338683
Target:  5'- uGGCGCuagCCCGCCCC-Cu-CCCCCaUCg -3'
miRNA:   3'- -CCGCGcg-GGGCGGGGcGucGGGGG-AG- -5'
31201 3' -69.7 NC_006560.1 + 36157 0.66 0.338683
Target:  5'- cGGCGUuCuCCCGCggaCCgGCGGaCCCCCg- -3'
miRNA:   3'- -CCGCGcG-GGGCG---GGgCGUC-GGGGGag -5'
31201 3' -69.7 NC_006560.1 + 107526 0.66 0.337985
Target:  5'- cGCGgGCCUgGCCCgCGUcGCCCggacgggCCUCc -3'
miRNA:   3'- cCGCgCGGGgCGGG-GCGuCGGG-------GGAG- -5'
31201 3' -69.7 NC_006560.1 + 48894 0.66 0.337985
Target:  5'- cGGCGCGCCgCGCgagcucaaccacgUCCGCgAGCgCCUg- -3'
miRNA:   3'- -CCGCGCGGgGCG-------------GGGCG-UCGgGGGag -5'
31201 3' -69.7 NC_006560.1 + 8260 0.66 0.331754
Target:  5'- cGUGCGCCCCGUgCC-Cu-CCCCCg- -3'
miRNA:   3'- cCGCGCGGGGCGgGGcGucGGGGGag -5'
31201 3' -69.7 NC_006560.1 + 73914 0.66 0.331754
Target:  5'- cGGCGCccGUCgUGCCCguggCGCAGCUCCUg- -3'
miRNA:   3'- -CCGCG--CGGgGCGGG----GCGUCGGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.