miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31201 5' -41.7 NC_006560.1 + 139390 0.68 1
Target:  5'- cCCAG--GAGGCGAggacgGCGAgcguGGAGGGAAc -3'
miRNA:   3'- -GGUUuaUUUCGCUa----CGCU----CCUUUUUU- -5'
31201 5' -41.7 NC_006560.1 + 32522 0.67 1
Target:  5'- gCAGGUAGGGCGccccccagggagGCGGGGAGu--- -3'
miRNA:   3'- gGUUUAUUUCGCua----------CGCUCCUUuuuu -5'
31201 5' -41.7 NC_006560.1 + 32100 0.69 1
Target:  5'- gCAGGUGGGGCGGcagGCGGGGc----- -3'
miRNA:   3'- gGUUUAUUUCGCUa--CGCUCCuuuuuu -5'
31201 5' -41.7 NC_006560.1 + 66828 0.69 1
Target:  5'- gCGcGUGAGGUGGUgGCGgAGGggGGAGg -3'
miRNA:   3'- gGUuUAUUUCGCUA-CGC-UCCuuUUUU- -5'
31201 5' -41.7 NC_006560.1 + 66751 0.69 1
Target:  5'- cCCGGGU--GGCGGaggGCGAGGAc---- -3'
miRNA:   3'- -GGUUUAuuUCGCUa--CGCUCCUuuuuu -5'
31201 5' -41.7 NC_006560.1 + 56031 0.68 1
Target:  5'- aCCAc--GAGGCGcUGCGuGGGGAAGGu -3'
miRNA:   3'- -GGUuuaUUUCGCuACGCuCCUUUUUU- -5'
31201 5' -41.7 NC_006560.1 + 33678 0.68 1
Target:  5'- cCCGGc--GGGCGucUGCGGGGAGGAg- -3'
miRNA:   3'- -GGUUuauUUCGCu-ACGCUCCUUUUuu -5'
31201 5' -41.7 NC_006560.1 + 33072 0.68 1
Target:  5'- gCCGAGgggAAGGCGGggaaggcggGCGAGGgcAGGGg -3'
miRNA:   3'- -GGUUUa--UUUCGCUa--------CGCUCCuuUUUU- -5'
31201 5' -41.7 NC_006560.1 + 33010 0.68 1
Target:  5'- gCAGGgggguGGGCGGgaaggccgGCGAGGGGAAGGg -3'
miRNA:   3'- gGUUUau---UUCGCUa-------CGCUCCUUUUUU- -5'
31201 5' -41.7 NC_006560.1 + 45246 0.65 1
Target:  5'- gCCGGGggggcgucuguGGCGcGUGCGGGGGAGGu- -3'
miRNA:   3'- -GGUUUauu--------UCGC-UACGCUCCUUUUuu -5'
31201 5' -41.7 NC_006560.1 + 143710 0.67 1
Target:  5'- aCGAGgcgAGAGCGGgcgcGuCGGGGAGAGGGa -3'
miRNA:   3'- gGUUUa--UUUCGCUa---C-GCUCCUUUUUU- -5'
31201 5' -41.7 NC_006560.1 + 68099 0.67 1
Target:  5'- aCCGAGgccccGGGgGAcGCGGGGGAGGAc -3'
miRNA:   3'- -GGUUUau---UUCgCUaCGCUCCUUUUUu -5'
31201 5' -41.7 NC_006560.1 + 142671 0.68 1
Target:  5'- gCCGGGUGAGGgGcgGCGGcGGAccGGAGGg -3'
miRNA:   3'- -GGUUUAUUUCgCuaCGCU-CCU--UUUUU- -5'
31201 5' -41.7 NC_006560.1 + 26492 0.68 1
Target:  5'- cCCGGcggGGGGCGGgcgcGCGAGGggGc-- -3'
miRNA:   3'- -GGUUua-UUUCGCUa---CGCUCCuuUuuu -5'
31201 5' -41.7 NC_006560.1 + 20907 0.68 1
Target:  5'- cCCGggcGGUGGGcGCGGaGCGAGGAGGGc- -3'
miRNA:   3'- -GGU---UUAUUU-CGCUaCGCUCCUUUUuu -5'
31201 5' -41.7 NC_006560.1 + 75229 0.68 1
Target:  5'- gCCGAGgcgcGCGcgggccuggccgcGUGCGAGGggGAGu -3'
miRNA:   3'- -GGUUUauuuCGC-------------UACGCUCCuuUUUu -5'
31201 5' -41.7 NC_006560.1 + 14367 0.67 1
Target:  5'- gCAuGGUGGGGCGAgGCGAGGcgGGGc -3'
miRNA:   3'- gGU-UUAUUUCGCUaCGCUCCuuUUUu -5'
31201 5' -41.7 NC_006560.1 + 14718 0.67 1
Target:  5'- gUCGAGgccGGGCGAggcgGUGAGGAAcgGAa -3'
miRNA:   3'- -GGUUUau-UUCGCUa---CGCUCCUUuuUU- -5'
31201 5' -41.7 NC_006560.1 + 57285 0.67 1
Target:  5'- cUCGGAgAGAGCGccGCGGGGGGc--- -3'
miRNA:   3'- -GGUUUaUUUCGCuaCGCUCCUUuuuu -5'
31201 5' -41.7 NC_006560.1 + 131988 0.67 1
Target:  5'- gCCGAGUAcuGGGCGGUcGCgGAGGGc---- -3'
miRNA:   3'- -GGUUUAU--UUCGCUA-CG-CUCCUuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.