miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 3' -63.7 NC_006560.1 + 103094 0.66 0.559537
Target:  5'- cGGUC-CCGcccccGCGGaCCCGGCGgcggacgcgGGGGCg -3'
miRNA:   3'- -CCAGaGGU-----CGUCcGGGCCGC---------UCCCGa -5'
31203 3' -63.7 NC_006560.1 + 54744 0.66 0.559537
Target:  5'- --aCUCCAGCcacccGGCCCcGC-AGGGCg -3'
miRNA:   3'- ccaGAGGUCGu----CCGGGcCGcUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 3034 0.66 0.558579
Target:  5'- cGG-Cg-CAGCGGGCCCGaGgcgcggagcggccCGAGGGCg -3'
miRNA:   3'- -CCaGagGUCGUCCGGGC-C-------------GCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 53039 0.66 0.54998
Target:  5'- cGGgCUCCAugcaguGCAuGGCCCuGCGGGcGGCc -3'
miRNA:   3'- -CCaGAGGU------CGU-CCGGGcCGCUC-CCGa -5'
31203 3' -63.7 NC_006560.1 + 129883 0.66 0.54998
Target:  5'- --cUUCCGGCugcgcGcGCCCGcGUGGGGGCg -3'
miRNA:   3'- ccaGAGGUCGu----C-CGGGC-CGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 101717 0.66 0.54998
Target:  5'- cGGUUgaccucgUCGGCguGGGCCCGGCcgccGGGGUUc -3'
miRNA:   3'- -CCAGa------GGUCG--UCCGGGCCGc---UCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 15597 0.66 0.54998
Target:  5'- aGGUC-CUggGGCcacacgGGGUCCaGCGGGGGCa -3'
miRNA:   3'- -CCAGaGG--UCG------UCCGGGcCGCUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 106074 0.66 0.540475
Target:  5'- aGGccCUCCGGCAggcGGCCCGGUauccccacGAGGacGCg -3'
miRNA:   3'- -CCa-GAGGUCGU---CCGGGCCG--------CUCC--CGa -5'
31203 3' -63.7 NC_006560.1 + 33442 0.66 0.540475
Target:  5'- gGGUCcCCgcgcacgcgGGCGGGCCCGGgcaggagGAGaGGCg -3'
miRNA:   3'- -CCAGaGG---------UCGUCCGGGCCg------CUC-CCGa -5'
31203 3' -63.7 NC_006560.1 + 96469 0.66 0.540475
Target:  5'- cGUCUC--GCAGGUCUGGUucGGGCa -3'
miRNA:   3'- cCAGAGguCGUCCGGGCCGcuCCCGa -5'
31203 3' -63.7 NC_006560.1 + 93654 0.66 0.540475
Target:  5'- gGGUCgCCgcGGCuucGGCuCCGGCGucGGCg -3'
miRNA:   3'- -CCAGaGG--UCGu--CCG-GGCCGCucCCGa -5'
31203 3' -63.7 NC_006560.1 + 19553 0.66 0.540475
Target:  5'- --cCUCCGGC-GGCCCcccggaGGCGGcaccGGGCg -3'
miRNA:   3'- ccaGAGGUCGuCCGGG------CCGCU----CCCGa -5'
31203 3' -63.7 NC_006560.1 + 94371 0.66 0.540475
Target:  5'- cGUCacCCAGCAGGCCCaGGUcc-GGCUc -3'
miRNA:   3'- cCAGa-GGUCGUCCGGG-CCGcucCCGA- -5'
31203 3' -63.7 NC_006560.1 + 63309 0.66 0.540475
Target:  5'- cGGUCguguccCCGGC-GGCaCUggGGCGuGGGCUg -3'
miRNA:   3'- -CCAGa-----GGUCGuCCG-GG--CCGCuCCCGA- -5'
31203 3' -63.7 NC_006560.1 + 111206 0.66 0.534798
Target:  5'- cGGgccaUCCAGCAgcuGGCCCGcaacgugcaggccguGCuGGGGGCg -3'
miRNA:   3'- -CCag--AGGUCGU---CCGGGC---------------CG-CUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 27627 0.66 0.531025
Target:  5'- --gCUCgCGGCGGGCgCGGCc-GGGCg -3'
miRNA:   3'- ccaGAG-GUCGUCCGgGCCGcuCCCGa -5'
31203 3' -63.7 NC_006560.1 + 146005 0.66 0.531025
Target:  5'- gGGUCaUCCAG-AGGCCgugGGCG-GGGUc -3'
miRNA:   3'- -CCAG-AGGUCgUCCGGg--CCGCuCCCGa -5'
31203 3' -63.7 NC_006560.1 + 34601 0.66 0.531025
Target:  5'- gGGgggCUCCgggGGguGGCCgcgCGGCucGGGGGCg -3'
miRNA:   3'- -CCa--GAGG---UCguCCGG---GCCG--CUCCCGa -5'
31203 3' -63.7 NC_006560.1 + 133470 0.66 0.531025
Target:  5'- cGGgCUCCGGgGcGUCCGGCGucuacGGGCg -3'
miRNA:   3'- -CCaGAGGUCgUcCGGGCCGCu----CCCGa -5'
31203 3' -63.7 NC_006560.1 + 35394 0.66 0.531025
Target:  5'- gGGgagCUCCAGC-GG-CCGGCGccGGCc -3'
miRNA:   3'- -CCa--GAGGUCGuCCgGGCCGCucCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.