miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31203 5' -58 NC_006560.1 + 18871 0.67 0.742055
Target:  5'- cGGGGCCGCCgccccgccCGCCGUGGGCggcGGAg -3'
miRNA:   3'- -UUUCGGUGGa-------GCGGCAUCUGggaCCU- -5'
31203 5' -58 NC_006560.1 + 105086 0.67 0.732297
Target:  5'- --cGCCGuCCUCGCgGggccGGCCCgGGAa -3'
miRNA:   3'- uuuCGGU-GGAGCGgCau--CUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 77133 0.67 0.732297
Target:  5'- --cGCCGCCcgcgccccugcUCGCCGacauccgcGCCCUGGAg -3'
miRNA:   3'- uuuCGGUGG-----------AGCGGCauc-----UGGGACCU- -5'
31203 5' -58 NC_006560.1 + 104639 0.67 0.732297
Target:  5'- cAGGCCACC-CGCCacugcuggaUGGACCUcaUGGAg -3'
miRNA:   3'- uUUCGGUGGaGCGGc--------AUCUGGG--ACCU- -5'
31203 5' -58 NC_006560.1 + 46114 0.67 0.732297
Target:  5'- aAAAGCCACCUccCGCCGguuGGCCa-GGc -3'
miRNA:   3'- -UUUCGGUGGA--GCGGCau-CUGGgaCCu -5'
31203 5' -58 NC_006560.1 + 24685 0.67 0.722453
Target:  5'- --cGCCGCCUCGUCGUcguGGacgccgugccGCCCgaGGAg -3'
miRNA:   3'- uuuCGGUGGAGCGGCA---UC----------UGGGa-CCU- -5'
31203 5' -58 NC_006560.1 + 132631 0.68 0.712531
Target:  5'- -cGGCCGCCcagcCGCCGgacaGGACCCcgucgGGGu -3'
miRNA:   3'- uuUCGGUGGa---GCGGCa---UCUGGGa----CCU- -5'
31203 5' -58 NC_006560.1 + 97791 0.68 0.702542
Target:  5'- cGAGGCCGacgggcCCUCGUCGaGGGCCagCUGGGc -3'
miRNA:   3'- -UUUCGGU------GGAGCGGCaUCUGG--GACCU- -5'
31203 5' -58 NC_006560.1 + 30032 0.68 0.696519
Target:  5'- cGAGGCCgaggaggcggugcgcGCCggcacCGCCGUGGACUucauCUGGAc -3'
miRNA:   3'- -UUUCGG---------------UGGa----GCGGCAUCUGG----GACCU- -5'
31203 5' -58 NC_006560.1 + 44497 0.68 0.692493
Target:  5'- cGAGgCGCCUCGUCaaggcccGGGCCCUGGc -3'
miRNA:   3'- uUUCgGUGGAGCGGca-----UCUGGGACCu -5'
31203 5' -58 NC_006560.1 + 22195 0.68 0.682393
Target:  5'- cGGGGCCGCCgUCGCCGc-GGCCCg--- -3'
miRNA:   3'- -UUUCGGUGG-AGCGGCauCUGGGaccu -5'
31203 5' -58 NC_006560.1 + 17666 0.68 0.682393
Target:  5'- cGGGCgGCCUcgucccgggCGCCGUgGGGCCCgGGGg -3'
miRNA:   3'- uUUCGgUGGA---------GCGGCA-UCUGGGaCCU- -5'
31203 5' -58 NC_006560.1 + 129320 0.68 0.672253
Target:  5'- --cGCCGCCggcgucguccCGaCCGUGGGCCCggcgGGGg -3'
miRNA:   3'- uuuCGGUGGa---------GC-GGCAUCUGGGa---CCU- -5'
31203 5' -58 NC_006560.1 + 145081 0.68 0.672253
Target:  5'- cGGGGCCggGCCUC-CCG-AGcCCCUGGGg -3'
miRNA:   3'- -UUUCGG--UGGAGcGGCaUCuGGGACCU- -5'
31203 5' -58 NC_006560.1 + 126602 0.68 0.66208
Target:  5'- -cGGCCACUgCGCCuccgccacGUAGuaACCCUGGGc -3'
miRNA:   3'- uuUCGGUGGaGCGG--------CAUC--UGGGACCU- -5'
31203 5' -58 NC_006560.1 + 23566 0.69 0.651882
Target:  5'- -cGGCgACCUCGCCGccGugCCcGGGc -3'
miRNA:   3'- uuUCGgUGGAGCGGCauCugGGaCCU- -5'
31203 5' -58 NC_006560.1 + 106746 0.69 0.64167
Target:  5'- -uGGCCACCcaCGCCGaccugcgGGacGCCCUGGGc -3'
miRNA:   3'- uuUCGGUGGa-GCGGCa------UC--UGGGACCU- -5'
31203 5' -58 NC_006560.1 + 71794 0.69 0.64167
Target:  5'- -cGGCCAgcCCUCGCCG--GGCCUgcUGGAg -3'
miRNA:   3'- uuUCGGU--GGAGCGGCauCUGGG--ACCU- -5'
31203 5' -58 NC_006560.1 + 97412 0.69 0.630427
Target:  5'- -cGGCCACCcCGggccccuCCGUGGACCCccccagcgUGGAg -3'
miRNA:   3'- uuUCGGUGGaGC-------GGCAUCUGGG--------ACCU- -5'
31203 5' -58 NC_006560.1 + 148276 0.69 0.621229
Target:  5'- cGGGGCCGCgagcgCgGCCGUAGACCCccaGGAc -3'
miRNA:   3'- -UUUCGGUGga---G-CGGCAUCUGGGa--CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.