miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3121 5' -62.5 NC_001493.1 + 48455 0.67 0.544908
Target:  5'- cCGGGCCaaCACCaagaccgUGCCACCCacgaucgCCGCGCu -3'
miRNA:   3'- -GUCUGG--GUGGga-----GCGGUGGG-------GGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 120083 0.67 0.540123
Target:  5'- -cGACCCgaauaagaugucgguGaCCCcCGCCGCUgCCGCGCc -3'
miRNA:   3'- guCUGGG---------------U-GGGaGCGGUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 4529 0.67 0.540123
Target:  5'- -cGACCCgaauaagaugucgguGaCCCcCGCCGCUgCCGCGCc -3'
miRNA:   3'- guCUGGG---------------U-GGGaGCGGUGGgGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 123906 0.67 0.536306
Target:  5'- gGGGCCgCGCgUCUCGCCcgaccgUCCUCACGCc -3'
miRNA:   3'- gUCUGG-GUG-GGAGCGGu-----GGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 8352 0.67 0.536306
Target:  5'- gGGGCCgCGCgUCUCGCCcgaccgUCCUCACGCc -3'
miRNA:   3'- gUCUGG-GUG-GGAGCGGu-----GGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 54933 0.67 0.526804
Target:  5'- -cGACCaGCCCggaGCuCGCUCCCGCGg -3'
miRNA:   3'- guCUGGgUGGGag-CG-GUGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 61017 0.67 0.521133
Target:  5'- cCAGaACCCucuCCCUCGauuCCAgacuugucaucgaacCCCCCGCGg -3'
miRNA:   3'- -GUC-UGGGu--GGGAGC---GGU---------------GGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 123321 0.67 0.517366
Target:  5'- gGGACCCGCCa-CGCUcCUCUCGCGg -3'
miRNA:   3'- gUCUGGGUGGgaGCGGuGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 42141 0.67 0.517366
Target:  5'- aCAGACCCAggagcCCCUUaucacuaugGaCCACCUCCAagUGCg -3'
miRNA:   3'- -GUCUGGGU-----GGGAG---------C-GGUGGGGGU--GCG- -5'
3121 5' -62.5 NC_001493.1 + 7767 0.67 0.517366
Target:  5'- gGGACCCGCCa-CGCUcCUCUCGCGg -3'
miRNA:   3'- gUCUGGGUGGgaGCGGuGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 133166 0.68 0.511735
Target:  5'- aAGGCCCgugggACCCUCgaccucagaggggguGCCcgcACCCUgGCGCg -3'
miRNA:   3'- gUCUGGG-----UGGGAG---------------CGG---UGGGGgUGCG- -5'
3121 5' -62.5 NC_001493.1 + 17611 0.68 0.511735
Target:  5'- aAGGCCCgugggACCCUCgaccucagaggggguGCCcgcACCCUgGCGCg -3'
miRNA:   3'- gUCUGGG-----UGGGAG---------------CGG---UGGGGgUGCG- -5'
3121 5' -62.5 NC_001493.1 + 130625 0.68 0.507996
Target:  5'- uCGGGCCCgcACCCgcacCGCUcccuccgggGCCCCuCGCGUc -3'
miRNA:   3'- -GUCUGGG--UGGGa---GCGG---------UGGGG-GUGCG- -5'
3121 5' -62.5 NC_001493.1 + 15071 0.68 0.507996
Target:  5'- uCGGGCCCgcACCCgcacCGCUcccuccgggGCCCCuCGCGUc -3'
miRNA:   3'- -GUCUGGG--UGGGa---GCGG---------UGGGG-GUGCG- -5'
3121 5' -62.5 NC_001493.1 + 133890 0.68 0.498698
Target:  5'- aCGGGuCCUACCUccaccucuUCGUC-CCCCUGCGCc -3'
miRNA:   3'- -GUCU-GGGUGGG--------AGCGGuGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 18336 0.68 0.498698
Target:  5'- aCGGGuCCUACCUccaccucuUCGUC-CCCCUGCGCc -3'
miRNA:   3'- -GUCU-GGGUGGG--------AGCGGuGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 61294 0.68 0.489477
Target:  5'- -uGGCCCACCCggCGCCucaCCUCAaguguaucuuCGCg -3'
miRNA:   3'- guCUGGGUGGGa-GCGGug-GGGGU----------GCG- -5'
3121 5' -62.5 NC_001493.1 + 48065 0.68 0.480337
Target:  5'- cCAGACCCGCggguCCgacCGCgAgCUCCAUGCa -3'
miRNA:   3'- -GUCUGGGUG----GGa--GCGgUgGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 46767 0.68 0.480337
Target:  5'- cCGGAUCCAUCUUCGaguuCgACCCCCGC-Ca -3'
miRNA:   3'- -GUCUGGGUGGGAGC----GgUGGGGGUGcG- -5'
3121 5' -62.5 NC_001493.1 + 80126 0.68 0.471281
Target:  5'- aUAGGuCCCcgACCCUgGCCAuggacgggauCCCCC-CGCu -3'
miRNA:   3'- -GUCU-GGG--UGGGAgCGGU----------GGGGGuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.