miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 3' -60 NC_006560.1 + 66937 0.66 0.782504
Target:  5'- cCCccGCCCCGgGGCGgGccuUGGGCGCn- -3'
miRNA:   3'- -GGuaCGGGGUgCUGCgC---ACCUGCGgc -5'
31213 3' -60 NC_006560.1 + 42542 0.66 0.782504
Target:  5'- cCCAgcGCCCCGgGgucGCGCGggGaGGCGCCc -3'
miRNA:   3'- -GGUa-CGGGGUgC---UGCGCa-C-CUGCGGc -5'
31213 3' -60 NC_006560.1 + 127658 0.66 0.782504
Target:  5'- gCCAgcggGCCggucuuguuuCC-CGACGCG-GGcGCGCCGa -3'
miRNA:   3'- -GGUa---CGG----------GGuGCUGCGCaCC-UGCGGC- -5'
31213 3' -60 NC_006560.1 + 28348 0.66 0.782504
Target:  5'- cCCGgcuccuCCCCGCGGCGgGgaGGAgcCGCCGc -3'
miRNA:   3'- -GGUac----GGGGUGCUGCgCa-CCU--GCGGC- -5'
31213 3' -60 NC_006560.1 + 118052 0.66 0.782504
Target:  5'- gCggGCCCgGCGcCGcCGcGGGCGCCc -3'
miRNA:   3'- gGuaCGGGgUGCuGC-GCaCCUGCGGc -5'
31213 3' -60 NC_006560.1 + 107449 0.66 0.782504
Target:  5'- aCCcUGCCCCucGCGAC-CGUcggcccggGGGCGCUc -3'
miRNA:   3'- -GGuACGGGG--UGCUGcGCA--------CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 104994 0.66 0.779842
Target:  5'- cCCcgGCCCCGCucggccggaggcauGcGCGCGgaacGGGCGCUc -3'
miRNA:   3'- -GGuaCGGGGUG--------------C-UGCGCa---CCUGCGGc -5'
31213 3' -60 NC_006560.1 + 92953 0.66 0.779842
Target:  5'- gCCGagGCCCUcgucacccagacggGCGGCGC--GGACGUCGg -3'
miRNA:   3'- -GGUa-CGGGG--------------UGCUGCGcaCCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 79480 0.66 0.773587
Target:  5'- gCGUGagccCCCCGCGGCGCcc--GCGCCGc -3'
miRNA:   3'- gGUAC----GGGGUGCUGCGcaccUGCGGC- -5'
31213 3' -60 NC_006560.1 + 82608 0.66 0.773587
Target:  5'- cCCGagGCCCCggACGGCGgcUGGGCGgCGg -3'
miRNA:   3'- -GGUa-CGGGG--UGCUGCgcACCUGCgGC- -5'
31213 3' -60 NC_006560.1 + 71638 0.66 0.773587
Target:  5'- --cUGCCUgguggaggGCGGgGCGUGGACGCgGg -3'
miRNA:   3'- gguACGGGg-------UGCUgCGCACCUGCGgC- -5'
31213 3' -60 NC_006560.1 + 10981 0.66 0.773587
Target:  5'- cCCccGCCCaCACGACGCcGUucGGccaccACGCCc -3'
miRNA:   3'- -GGuaCGGG-GUGCUGCG-CA--CC-----UGCGGc -5'
31213 3' -60 NC_006560.1 + 32698 0.66 0.773587
Target:  5'- gCCGgggGCUCCGCccgagGGCGCGcGGGC-CCGg -3'
miRNA:   3'- -GGUa--CGGGGUG-----CUGCGCaCCUGcGGC- -5'
31213 3' -60 NC_006560.1 + 110708 0.66 0.773587
Target:  5'- gCCGUcUCCCGCGACGCGcgccaUGGccgaGCCu -3'
miRNA:   3'- -GGUAcGGGGUGCUGCGC-----ACCug--CGGc -5'
31213 3' -60 NC_006560.1 + 108021 0.66 0.769988
Target:  5'- ---cGCCgCCGCGACGCGgagcaccgucucGGCGUCGg -3'
miRNA:   3'- gguaCGG-GGUGCUGCGCac----------CUGCGGC- -5'
31213 3' -60 NC_006560.1 + 123916 0.66 0.765463
Target:  5'- gCCGUcGCCCCGCGcugaGCGCaagcggcccccgccGGAgGCCGg -3'
miRNA:   3'- -GGUA-CGGGGUGC----UGCGca------------CCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 118241 0.66 0.764555
Target:  5'- aCCcgGUCCgCGCGG-GCGcGGAcCGCCGc -3'
miRNA:   3'- -GGuaCGGG-GUGCUgCGCaCCU-GCGGC- -5'
31213 3' -60 NC_006560.1 + 21591 0.66 0.764555
Target:  5'- cCCcUGCCCCcugcuuccGCGccuGCGCGcGG-CGCCGc -3'
miRNA:   3'- -GGuACGGGG--------UGC---UGCGCaCCuGCGGC- -5'
31213 3' -60 NC_006560.1 + 104556 0.66 0.764555
Target:  5'- ---aGCUguaCCGCGuguuUGCGUGGACGCuCGa -3'
miRNA:   3'- gguaCGG---GGUGCu---GCGCACCUGCG-GC- -5'
31213 3' -60 NC_006560.1 + 22276 0.66 0.764555
Target:  5'- ---cGCCCCcgccgaccccggGCGGCGCGccGcACGCCGg -3'
miRNA:   3'- gguaCGGGG------------UGCUGCGCacC-UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.