miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 5' -52.5 NC_006560.1 + 139973 0.66 0.971291
Target:  5'- ---gAUGUUGCGCAgGCUGGgggGAGCGGg -3'
miRNA:   3'- cugaUGCAGUGCGU-CGACCa--CUUGUU- -5'
31213 5' -52.5 NC_006560.1 + 109096 0.66 0.964928
Target:  5'- cGCUGCG-CACGUAGUUGGcGAcCAc -3'
miRNA:   3'- cUGAUGCaGUGCGUCGACCaCUuGUu -5'
31213 5' -52.5 NC_006560.1 + 123281 0.67 0.953627
Target:  5'- -uCUGCGUCGCGCAGCcgccgccccgGGguuccgGGACGc -3'
miRNA:   3'- cuGAUGCAGUGCGUCGa---------CCa-----CUUGUu -5'
31213 5' -52.5 NC_006560.1 + 61825 0.68 0.934557
Target:  5'- cGACUggcACGUCAccCGCAGCagguuguUGGUGcGCAGg -3'
miRNA:   3'- -CUGA---UGCAGU--GCGUCG-------ACCACuUGUU- -5'
31213 5' -52.5 NC_006560.1 + 128115 0.68 0.92425
Target:  5'- gGACgccacCGccaaCGCGCAGCUGGUGGAUu- -3'
miRNA:   3'- -CUGau---GCa---GUGCGUCGACCACUUGuu -5'
31213 5' -52.5 NC_006560.1 + 62463 0.69 0.89267
Target:  5'- cGGCgcggGCGcUCacaggACGCAGCUGGUGcaGACGAg -3'
miRNA:   3'- -CUGa---UGC-AG-----UGCGUCGACCAC--UUGUU- -5'
31213 5' -52.5 NC_006560.1 + 115447 0.7 0.862931
Target:  5'- cGCgagauCGUgGCGCGGCUGGUGGcgcGCGg -3'
miRNA:   3'- cUGau---GCAgUGCGUCGACCACU---UGUu -5'
31213 5' -52.5 NC_006560.1 + 55653 0.7 0.846679
Target:  5'- gGACaccGCGUCGCGguGCcaGGUGAACu- -3'
miRNA:   3'- -CUGa--UGCAGUGCguCGa-CCACUUGuu -5'
31213 5' -52.5 NC_006560.1 + 46194 0.71 0.820734
Target:  5'- cGGCUccccGCGUCGCGCcGUUGG-GGGCGAu -3'
miRNA:   3'- -CUGA----UGCAGUGCGuCGACCaCUUGUU- -5'
31213 5' -52.5 NC_006560.1 + 115833 0.73 0.692337
Target:  5'- uGGCUcgcgcACGcCGCGCAGCUGGgGGACGc -3'
miRNA:   3'- -CUGA-----UGCaGUGCGUCGACCaCUUGUu -5'
31213 5' -52.5 NC_006560.1 + 112823 0.83 0.241388
Target:  5'- ---gGCGcUCGCGCAGCUGGUGGGCGAc -3'
miRNA:   3'- cugaUGC-AGUGCGUCGACCACUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.