Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 124545 | 0.74 | 0.397882 |
Target: 5'- aCCAggcgGAGAGCCAGCUGuGgGCCCUgCUg -3' miRNA: 3'- -GGUg---CUCUCGGUCGAC-CaCGGGAaGA- -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 90862 | 0.73 | 0.450513 |
Target: 5'- gCCACGAGGGCCGGCccgcgGCCCcgCUc -3' miRNA: 3'- -GGUGCUCUCGGUCGacca-CGGGaaGA- -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 115079 | 0.72 | 0.506745 |
Target: 5'- gCUGCGAGGGCCGGgUGGUGU--UUCUg -3' miRNA: 3'- -GGUGCUCUCGGUCgACCACGggAAGA- -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 123020 | 0.72 | 0.506745 |
Target: 5'- aCCugGGGcgcuacaucGGCCAGCUGGcggGCCCgcgCg -3' miRNA: 3'- -GGugCUC---------UCGGUCGACCa--CGGGaa-Ga -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 77281 | 0.72 | 0.516414 |
Target: 5'- gCGCGAGgccaccAGCgAGCUGGaccUGCCCUUUg -3' miRNA: 3'- gGUGCUC------UCGgUCGACC---ACGGGAAGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 15282 | 0.71 | 0.526157 |
Target: 5'- gUCGCGGGAGCCGGCgcggcggcGGUGgCC-UCg -3' miRNA: 3'- -GGUGCUCUCGGUCGa-------CCACgGGaAGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 15779 | 0.71 | 0.555774 |
Target: 5'- gCC-CGGGGGCCGGCaGG-GCCCggCg -3' miRNA: 3'- -GGuGCUCUCGGUCGaCCaCGGGaaGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 77708 | 0.71 | 0.565758 |
Target: 5'- cUCGCG-GAGCCGGCgGGcGCCCggCg -3' miRNA: 3'- -GGUGCuCUCGGUCGaCCaCGGGaaGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 46395 | 0.7 | 0.626394 |
Target: 5'- gCCcCGGGGGU--GCUGGUGCCUUUUUa -3' miRNA: 3'- -GGuGCUCUCGguCGACCACGGGAAGA- -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 141552 | 0.69 | 0.677097 |
Target: 5'- uCCGCGGGAgaacGCCGGC-GG-GCCCggCUc -3' miRNA: 3'- -GGUGCUCU----CGGUCGaCCaCGGGaaGA- -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 39238 | 0.68 | 0.697182 |
Target: 5'- aCCGCGAGcGCCaucAGCgagggGGgggccGCCCUUCc -3' miRNA: 3'- -GGUGCUCuCGG---UCGa----CCa----CGGGAAGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 135578 | 0.68 | 0.707148 |
Target: 5'- aCCGCcuGGAGCCcGCgcgGGUGCCCc--- -3' miRNA: 3'- -GGUGc-UCUCGGuCGa--CCACGGGaaga -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 125177 | 0.68 | 0.713098 |
Target: 5'- aCGCGcGGGCCGGCggcgaaaagaggcGGUGCCCg--- -3' miRNA: 3'- gGUGCuCUCGGUCGa------------CCACGGGaaga -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 5514 | 0.68 | 0.717052 |
Target: 5'- gCgGCGAGGGUCGGCggcGGUcgcGCUCUUCc -3' miRNA: 3'- -GgUGCUCUCGGUCGa--CCA---CGGGAAGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 112714 | 0.68 | 0.726884 |
Target: 5'- gCCGCGuucGUCAacgacuacucGCUGGUGUCCUUCa -3' miRNA: 3'- -GGUGCucuCGGU----------CGACCACGGGAAGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 21715 | 0.68 | 0.736636 |
Target: 5'- cCCGCGccccggggcGGAGCCGGCcGGgcgccGCCCgUCg -3' miRNA: 3'- -GGUGC---------UCUCGGUCGaCCa----CGGGaAGa -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 97804 | 0.67 | 0.755861 |
Target: 5'- cCCucguCGAGGGCCAGCUGG-GCg----- -3' miRNA: 3'- -GGu---GCUCUCGGUCGACCaCGggaaga -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 72370 | 0.67 | 0.755861 |
Target: 5'- cUCGCGGGGGCgCcGCUGGcgcUGCCCg--- -3' miRNA: 3'- -GGUGCUCUCG-GuCGACC---ACGGGaaga -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 94547 | 0.67 | 0.764376 |
Target: 5'- gCCGCGAG-GCCGacgcccuGCUGGagGCCCa--- -3' miRNA: 3'- -GGUGCUCuCGGU-------CGACCa-CGGGaaga -5' |
|||||||
31214 | 3' | -57.7 | NC_006560.1 | + | 47317 | 0.67 | 0.774655 |
Target: 5'- gCCGCGcccaAGGGCCAgGCcacccccgcggUGGUGCCCa--- -3' miRNA: 3'- -GGUGC----UCUCGGU-CG-----------ACCACGGGaaga -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home