miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31214 5' -61.3 NC_006560.1 + 4300 0.66 0.7136
Target:  5'- -aGGCGCGGUCCagcuccACGUCGCcgGCCgUCAc -3'
miRNA:   3'- ccUCGUGCCAGGc-----UGCGGCG--CGG-AGU- -5'
31214 5' -61.3 NC_006560.1 + 125784 0.66 0.704032
Target:  5'- uGGAuCugGaGUCCGACGCCG-GCggCAa -3'
miRNA:   3'- -CCUcGugC-CAGGCUGCGGCgCGgaGU- -5'
31214 5' -61.3 NC_006560.1 + 20964 0.66 0.704032
Target:  5'- cGGGC-CGGcCgCGGCGCCGCcgGCUUUAu -3'
miRNA:   3'- cCUCGuGCCaG-GCUGCGGCG--CGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 115043 0.66 0.704032
Target:  5'- cGGGGaucuCGCGcG-CCGACGCCGCGgCgcugCAg -3'
miRNA:   3'- -CCUC----GUGC-CaGGCUGCGGCGCgGa---GU- -5'
31214 5' -61.3 NC_006560.1 + 39329 0.66 0.704032
Target:  5'- uGGGGCGgGG-CCGccCGCCcucGCGCCUg- -3'
miRNA:   3'- -CCUCGUgCCaGGCu-GCGG---CGCGGAgu -5'
31214 5' -61.3 NC_006560.1 + 2819 0.66 0.704032
Target:  5'- gGGGGCcCGGUCCaGuuGCCG-GCC-CAg -3'
miRNA:   3'- -CCUCGuGCCAGG-CugCGGCgCGGaGU- -5'
31214 5' -61.3 NC_006560.1 + 24099 0.66 0.704032
Target:  5'- cGGGCccgacccccgcgGCGG-CUGGCGCCGCGCg--- -3'
miRNA:   3'- cCUCG------------UGCCaGGCUGCGGCGCGgagu -5'
31214 5' -61.3 NC_006560.1 + 69366 0.66 0.703071
Target:  5'- cGAGUACGGcuaccacUCCGgcuACGUgCGCGCCUUc -3'
miRNA:   3'- cCUCGUGCC-------AGGC---UGCG-GCGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 67824 0.66 0.702111
Target:  5'- cGGAGC-CGGgucgcgucccccCCGACGCCagcccgggccgcGCGCCg-- -3'
miRNA:   3'- -CCUCGuGCCa-----------GGCUGCGG------------CGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 85255 0.66 0.70115
Target:  5'- -cGGCGCGGaagCCGGCGCUGCggaggcggaccgccGUCUCc -3'
miRNA:   3'- ccUCGUGCCa--GGCUGCGGCG--------------CGGAGu -5'
31214 5' -61.3 NC_006560.1 + 33407 0.66 0.698263
Target:  5'- gGGGGCGCGGgcggggagcgCCGGCGggaggagggggguccCCGCGCacgCGg -3'
miRNA:   3'- -CCUCGUGCCa---------GGCUGC---------------GGCGCGga-GU- -5'
31214 5' -61.3 NC_006560.1 + 27421 0.66 0.694407
Target:  5'- --cGCGCGGgccUCCGGCGuuucgcguCCGCGuCCUCc -3'
miRNA:   3'- ccuCGUGCC---AGGCUGC--------GGCGC-GGAGu -5'
31214 5' -61.3 NC_006560.1 + 80920 0.66 0.694407
Target:  5'- cGGGGCGCaG-CCaGuCGCCggGCGCCUCc -3'
miRNA:   3'- -CCUCGUGcCaGG-CuGCGG--CGCGGAGu -5'
31214 5' -61.3 NC_006560.1 + 93675 0.66 0.694407
Target:  5'- cGGcGUcgGCGGcggaCGACGCCGCgGUCUCGg -3'
miRNA:   3'- -CCuCG--UGCCag--GCUGCGGCG-CGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 74736 0.66 0.694407
Target:  5'- uGGAGCACccgacccCCGACacggcgGCCGCGCuCUCc -3'
miRNA:   3'- -CCUCGUGcca----GGCUG------CGGCGCG-GAGu -5'
31214 5' -61.3 NC_006560.1 + 1220 0.66 0.694407
Target:  5'- gGGGGCGgGG-CCccUGCCGCGCCc-- -3'
miRNA:   3'- -CCUCGUgCCaGGcuGCGGCGCGGagu -5'
31214 5' -61.3 NC_006560.1 + 25298 0.66 0.694407
Target:  5'- cGGGCcccCGGaccCCGcCGCCGCGCCgcgCGu -3'
miRNA:   3'- cCUCGu--GCCa--GGCuGCGGCGCGGa--GU- -5'
31214 5' -61.3 NC_006560.1 + 49371 0.66 0.694407
Target:  5'- cGGGGacgacgaccaCGCGGggacgCuCGACGCCGcCGCCUa- -3'
miRNA:   3'- -CCUC----------GUGCCa----G-GCUGCGGC-GCGGAgu -5'
31214 5' -61.3 NC_006560.1 + 2268 0.66 0.694407
Target:  5'- -aGGCGCGGUgCGA-G-UGCGCCUCGc -3'
miRNA:   3'- ccUCGUGCCAgGCUgCgGCGCGGAGU- -5'
31214 5' -61.3 NC_006560.1 + 64773 0.66 0.694407
Target:  5'- cGGAGgcgaaggucCGCGGcCCGGCGCUccgcuccccCGCCUCGc -3'
miRNA:   3'- -CCUC---------GUGCCaGGCUGCGGc--------GCGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.