Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31215 | 3' | -64.7 | NC_006560.1 | + | 90120 | 0.66 | 0.500971 |
Target: 5'- gGUGac-GGUCggcGGGGACgCCGuCCGGCg -3' miRNA: 3'- gUACgacCCGGa--CCCCUG-GGC-GGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 67069 | 0.66 | 0.500971 |
Target: 5'- gAUGgaGGGC--GGGGcuGCCCG-CGGCg -3' miRNA: 3'- gUACgaCCCGgaCCCC--UGGGCgGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 15140 | 0.66 | 0.500971 |
Target: 5'- --cGC-GGGCuCUGGGcccCCCGCCcccGGCg -3' miRNA: 3'- guaCGaCCCG-GACCCcu-GGGCGG---CCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 131953 | 0.66 | 0.500971 |
Target: 5'- --gGCUGGuCCUGGaGGCCuuCGCgCGGCg -3' miRNA: 3'- guaCGACCcGGACCcCUGG--GCG-GCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 52929 | 0.66 | 0.500057 |
Target: 5'- -cUGCcGGcGCCUGGaccccacGGG-CCGCCGGUg -3' miRNA: 3'- guACGaCC-CGGACC-------CCUgGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 54922 | 0.66 | 0.49277 |
Target: 5'- --cGCUcggGGGCCggggcggccaucgucGGGGcucGCgCGCCGGCg -3' miRNA: 3'- guaCGA---CCCGGa--------------CCCC---UGgGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 30843 | 0.66 | 0.491862 |
Target: 5'- --cGCUGGGCC-GGGcGccgcCCCGCCccGCg -3' miRNA: 3'- guaCGACCCGGaCCC-Cu---GGGCGGc-CG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 7951 | 0.66 | 0.491862 |
Target: 5'- --cGCUGGcGCCccgcguccGGACCCaCCGGCa -3' miRNA: 3'- guaCGACC-CGGacc-----CCUGGGcGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 76697 | 0.66 | 0.491862 |
Target: 5'- aGUGCgcgggGGcGCCUGGa-AgUCGCCGGCg -3' miRNA: 3'- gUACGa----CC-CGGACCccUgGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 90472 | 0.66 | 0.483731 |
Target: 5'- --gGCgGGGCCgcaaaggcggcccagGGGGGCuucgagcgCCGCCuGGCg -3' miRNA: 3'- guaCGaCCCGGa--------------CCCCUG--------GGCGG-CCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 71955 | 0.66 | 0.482831 |
Target: 5'- ------cGGCCUGcGGGaggGCUCGCCGGCc -3' miRNA: 3'- guacgacCCGGAC-CCC---UGGGCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 65043 | 0.66 | 0.482831 |
Target: 5'- --aGCgGGGCCgggcgcGGGGGCaggggCCGCgGGUg -3' miRNA: 3'- guaCGaCCCGGa-----CCCCUG-----GGCGgCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 142716 | 0.66 | 0.481933 |
Target: 5'- --cGCggccccgaGGcGCCcgGGGGGCCCGgcggagcCCGGCg -3' miRNA: 3'- guaCGa-------CC-CGGa-CCCCUGGGC-------GGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 68452 | 0.67 | 0.473881 |
Target: 5'- --cGCccugGGGCCgGcGcGGACCCGCCaGUg -3' miRNA: 3'- guaCGa---CCCGGaC-C-CCUGGGCGGcCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 78335 | 0.67 | 0.473881 |
Target: 5'- gCGUGCUGGuCCgcGGcGGCCCGCCcgaccccgcGGCg -3' miRNA: 3'- -GUACGACCcGGa-CCcCUGGGCGG---------CCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 58394 | 0.67 | 0.473881 |
Target: 5'- --cGCgucGGcGCCcccGGGGGCCgCGUCGGUg -3' miRNA: 3'- guaCGa--CC-CGGa--CCCCUGG-GCGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 146887 | 0.67 | 0.473881 |
Target: 5'- --gGCcaGGGCCUGGGccaGGgCCGCCugGGCc -3' miRNA: 3'- guaCGa-CCCGGACCC---CUgGGCGG--CCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 112402 | 0.67 | 0.473881 |
Target: 5'- -cUGCcGGGCCcccGGGcccccCCCGCCGGg -3' miRNA: 3'- guACGaCCCGGac-CCCu----GGGCGGCCg -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 132571 | 0.67 | 0.47299 |
Target: 5'- cCGU-CUGGGuCUUGGGGgcguccgacGCCCaccaggccgcgagGCCGGCg -3' miRNA: 3'- -GUAcGACCC-GGACCCC---------UGGG-------------CGGCCG- -5' |
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31215 | 3' | -64.7 | NC_006560.1 | + | 146362 | 0.67 | 0.465014 |
Target: 5'- --gGCggGGGCCgagGGaGGAUCCGUgugcucucuCGGCa -3' miRNA: 3'- guaCGa-CCCGGa--CC-CCUGGGCG---------GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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