miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31215 5' -57.8 NC_006560.1 + 50944 0.66 0.8152
Target:  5'- --cCCUGcUGGcgACCCGgGGACUCGCGg -3'
miRNA:   3'- gauGGACcACU--UGGGCgUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 119500 0.66 0.8152
Target:  5'- uCUGCCgggaGGUGccuccGGgCCGCGGGgCCGCGc -3'
miRNA:   3'- -GAUGGa---CCAC-----UUgGGCGUCUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 3296 0.66 0.813476
Target:  5'- -cGCCgggcgggcgggcGGUGAGCgCCGCGGGCCgggggCGCGg -3'
miRNA:   3'- gaUGGa-----------CCACUUG-GGCGUCUGG-----GCGU- -5'
31215 5' -57.8 NC_006560.1 + 26676 0.67 0.797679
Target:  5'- -gGCCgcgggggGGgacgGGGCCCGCGacgaGCCCGCGc -3'
miRNA:   3'- gaUGGa------CCa---CUUGGGCGUc---UGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 118706 0.67 0.788693
Target:  5'- --cCCUGGUGGcgGCCUGCGccgaggaggacGAgCCGCAc -3'
miRNA:   3'- gauGGACCACU--UGGGCGU-----------CUgGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 114114 0.67 0.788693
Target:  5'- uCUACCUGGg----CCGCGGGgcCCCGCc -3'
miRNA:   3'- -GAUGGACCacuugGGCGUCU--GGGCGu -5'
31215 5' -57.8 NC_006560.1 + 145234 0.67 0.788693
Target:  5'- -cGCCccgGGgGAGCCCGCAGcCCC-CGg -3'
miRNA:   3'- gaUGGa--CCaCUUGGGCGUCuGGGcGU- -5'
31215 5' -57.8 NC_006560.1 + 26761 0.67 0.77957
Target:  5'- cCUugCgauucGAACCCGCGuGCCCGCGg -3'
miRNA:   3'- -GAugGacca-CUUGGGCGUcUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 90864 0.67 0.77957
Target:  5'- -cACgaGGgccGGCCCGCGGcCCCGCu -3'
miRNA:   3'- gaUGgaCCac-UUGGGCGUCuGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 43321 0.67 0.774959
Target:  5'- -cGCCgcucgacguagagGGgGAACCCcgcggccGCGGGCCCGCGg -3'
miRNA:   3'- gaUGGa------------CCaCUUGGG-------CGUCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 116667 0.67 0.760942
Target:  5'- -----cGGccGAGCCCGUgaGGGCCCGCAg -3'
miRNA:   3'- gauggaCCa-CUUGGGCG--UCUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 74640 0.67 0.760942
Target:  5'- cCUGCCUGcccGAcGCCgCGCAGGCCgCGCc -3'
miRNA:   3'- -GAUGGACca-CU-UGG-GCGUCUGG-GCGu -5'
31215 5' -57.8 NC_006560.1 + 16405 0.67 0.760942
Target:  5'- -cGCCUGGagccgcGGugCCGCccGCCCGCGc -3'
miRNA:   3'- gaUGGACCa-----CUugGGCGucUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 134676 0.67 0.751456
Target:  5'- -cGCC-GGcGGGgUCGCGGACCCGCc -3'
miRNA:   3'- gaUGGaCCaCUUgGGCGUCUGGGCGu -5'
31215 5' -57.8 NC_006560.1 + 122623 0.68 0.741866
Target:  5'- -cACCgGGcUGAcccGCCCGCcccugcGGCCCGCGg -3'
miRNA:   3'- gaUGGaCC-ACU---UGGGCGu-----CUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 144853 0.68 0.741866
Target:  5'- uCUGCCcGGggGGcuGCCCGCc-GCCCGCGu -3'
miRNA:   3'- -GAUGGaCCa-CU--UGGGCGucUGGGCGU- -5'
31215 5' -57.8 NC_006560.1 + 115246 0.68 0.740902
Target:  5'- -cGCCUGGUGGccuacccccuggACCuggggcugacgcaCGCGGGCaCCGCGa -3'
miRNA:   3'- gaUGGACCACU------------UGG-------------GCGUCUG-GGCGU- -5'
31215 5' -57.8 NC_006560.1 + 72603 0.68 0.732183
Target:  5'- cCUGCCgacucGGACCCGcCGGGCCgCGCGg -3'
miRNA:   3'- -GAUGGacca-CUUGGGC-GUCUGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 111784 0.68 0.732183
Target:  5'- -gAgCUGGaGAGCgcgCCGCAGACCaCGCGc -3'
miRNA:   3'- gaUgGACCaCUUG---GGCGUCUGG-GCGU- -5'
31215 5' -57.8 NC_006560.1 + 110419 0.68 0.732183
Target:  5'- --cCCUGGgGAcgGCCUGCGGGgCCGCc -3'
miRNA:   3'- gauGGACCaCU--UGGGCGUCUgGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.