miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31218 3' -67.2 NC_006560.1 + 77465 0.66 0.429268
Target:  5'- aCGCuCGCGGCCAUgugCACCGuc--CCCCUg -3'
miRNA:   3'- -GCG-GCGCCGGUG---GUGGCcgucGGGGA- -5'
31218 3' -67.2 NC_006560.1 + 39517 0.66 0.429268
Target:  5'- uCGCCucuCGcGUCGCCGCCGucgGGCCCCUc -3'
miRNA:   3'- -GCGGc--GC-CGGUGGUGGCcg-UCGGGGA- -5'
31218 3' -67.2 NC_006560.1 + 52537 0.66 0.429268
Target:  5'- gGCgGgGGCguCgAgCGGCGGCCUCUg -3'
miRNA:   3'- gCGgCgCCGguGgUgGCCGUCGGGGA- -5'
31218 3' -67.2 NC_006560.1 + 59023 0.66 0.429268
Target:  5'- gGCgCGCuGGCCGCCGCgcagGGC-GCCCa- -3'
miRNA:   3'- gCG-GCG-CCGGUGGUGg---CCGuCGGGga -5'
31218 3' -67.2 NC_006560.1 + 57444 0.66 0.429268
Target:  5'- cCGCgCGCuGGCCcCCGCCGcGaAGCCgCCg -3'
miRNA:   3'- -GCG-GCG-CCGGuGGUGGC-CgUCGG-GGa -5'
31218 3' -67.2 NC_006560.1 + 138514 0.66 0.429268
Target:  5'- gCGCCGCcccgucuGCCcCCAccccCCGGCGacGCCCCc -3'
miRNA:   3'- -GCGGCGc------CGGuGGU----GGCCGU--CGGGGa -5'
31218 3' -67.2 NC_006560.1 + 104420 0.66 0.429268
Target:  5'- uCGUgGCgGGCCGacuggCACCGGCuGGCgCCCg -3'
miRNA:   3'- -GCGgCG-CCGGUg----GUGGCCG-UCG-GGGa -5'
31218 3' -67.2 NC_006560.1 + 39875 0.66 0.429268
Target:  5'- gGUCgGCGGCCAUCGCgaGGCGGguCUCCg -3'
miRNA:   3'- gCGG-CGCCGGUGGUGg-CCGUC--GGGGa -5'
31218 3' -67.2 NC_006560.1 + 28499 0.66 0.428438
Target:  5'- gGCCGCGcccccucGCCGCCA-UGGCGGUCUa- -3'
miRNA:   3'- gCGGCGC-------CGGUGGUgGCCGUCGGGga -5'
31218 3' -67.2 NC_006560.1 + 4516 0.66 0.428438
Target:  5'- uGUCGCccaGGCCGCCGuagagcacgcgccCCGGgggcgggggcuCGGCCCCg -3'
miRNA:   3'- gCGGCG---CCGGUGGU-------------GGCC-----------GUCGGGGa -5'
31218 3' -67.2 NC_006560.1 + 129184 0.66 0.428438
Target:  5'- uCGUCGCGcucaugcGCgGCC-UCGGCGGCCCg- -3'
miRNA:   3'- -GCGGCGC-------CGgUGGuGGCCGUCGGGga -5'
31218 3' -67.2 NC_006560.1 + 12414 0.66 0.428438
Target:  5'- cCGCgCGCGGCCgacgaacggggaACUGCgucggggCGGCcGCCCCg -3'
miRNA:   3'- -GCG-GCGCCGG------------UGGUG-------GCCGuCGGGGa -5'
31218 3' -67.2 NC_006560.1 + 125778 0.66 0.42678
Target:  5'- aCGCCGUGGaucuggaguCCGaCGCCGGCGGCaacuucuacaucucCCCg -3'
miRNA:   3'- -GCGGCGCC---------GGUgGUGGCCGUCG--------------GGGa -5'
31218 3' -67.2 NC_006560.1 + 132912 0.66 0.42101
Target:  5'- uGCgGCGGCCGa---CGGCGGCCagCCa -3'
miRNA:   3'- gCGgCGCCGGUggugGCCGUCGG--GGa -5'
31218 3' -67.2 NC_006560.1 + 39619 0.66 0.42101
Target:  5'- gCGCCGCGGCgGgCGUCGGC-GUCCg- -3'
miRNA:   3'- -GCGGCGCCGgUgGUGGCCGuCGGGga -5'
31218 3' -67.2 NC_006560.1 + 6408 0.66 0.42101
Target:  5'- aGCCgGCGgcGCCGCgGCCGGCccGCCgCa -3'
miRNA:   3'- gCGG-CGC--CGGUGgUGGCCGu-CGGgGa -5'
31218 3' -67.2 NC_006560.1 + 42762 0.66 0.42101
Target:  5'- cCGUgGCGGCCAgCCGCagcaGGC-GCCgCa -3'
miRNA:   3'- -GCGgCGCCGGU-GGUGg---CCGuCGGgGa -5'
31218 3' -67.2 NC_006560.1 + 55606 0.66 0.42101
Target:  5'- gGCCGCGGCagCACCgucggggcACCGGUGGCgUUUc -3'
miRNA:   3'- gCGGCGCCG--GUGG--------UGGCCGUCGgGGA- -5'
31218 3' -67.2 NC_006560.1 + 21037 0.66 0.42101
Target:  5'- gGCCGgGGCgGggcgcCCGCgCGGCGuCCCCg -3'
miRNA:   3'- gCGGCgCCGgU-----GGUG-GCCGUcGGGGa -5'
31218 3' -67.2 NC_006560.1 + 119401 0.66 0.42101
Target:  5'- aCGCCcucGUGGUCuuCC-CCGGCGGCUUCg -3'
miRNA:   3'- -GCGG---CGCCGGu-GGuGGCCGUCGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.