miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31218 5' -54.7 NC_006560.1 + 131900 0.66 0.946944
Target:  5'- -gGAGGGCGCCGgcgcggagaaggcgCGGCuUGCCGCg-- -3'
miRNA:   3'- agUUCCUGCGGCa-------------GUUG-GCGGUGaug -5'
31218 5' -54.7 NC_006560.1 + 108729 0.66 0.945173
Target:  5'- gUCAAaGAgGCCGUCGGCCaGgCGCUcCa -3'
miRNA:   3'- -AGUUcCUgCGGCAGUUGG-CgGUGAuG- -5'
31218 5' -54.7 NC_006560.1 + 100536 0.66 0.945173
Target:  5'- cUCGAGGACGCgcucCAGCUGCgCGC-ACg -3'
miRNA:   3'- -AGUUCCUGCGgca-GUUGGCG-GUGaUG- -5'
31218 5' -54.7 NC_006560.1 + 115699 0.66 0.945173
Target:  5'- --cAGGACGgcuaCGUgAACaCGCUGCUGCa -3'
miRNA:   3'- aguUCCUGCg---GCAgUUG-GCGGUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 119667 0.66 0.945173
Target:  5'- aCGcGGACGCCGUgGcguCCGUCGCc-- -3'
miRNA:   3'- aGUuCCUGCGGCAgUu--GGCGGUGaug -5'
31218 5' -54.7 NC_006560.1 + 96905 0.66 0.945173
Target:  5'- cCGcGGAcCGCUuccggcagGUCGACgGCUACUACg -3'
miRNA:   3'- aGUuCCU-GCGG--------CAGUUGgCGGUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 135189 0.66 0.945173
Target:  5'- --cAGGGCGCCGaaGACgGCgGcCUGCa -3'
miRNA:   3'- aguUCCUGCGGCagUUGgCGgU-GAUG- -5'
31218 5' -54.7 NC_006560.1 + 85115 0.66 0.944725
Target:  5'- aCAcGGACGUCccggccguGUCGGCCGCCGacauuuaUUGCa -3'
miRNA:   3'- aGUuCCUGCGG--------CAGUUGGCGGU-------GAUG- -5'
31218 5' -54.7 NC_006560.1 + 142698 0.66 0.94058
Target:  5'- -aGGGGGCGCC--CGGCCGgCCGCgGCc -3'
miRNA:   3'- agUUCCUGCGGcaGUUGGC-GGUGaUG- -5'
31218 5' -54.7 NC_006560.1 + 131065 0.66 0.94058
Target:  5'- cCGGcGGGCGCCGcCGccgugcCCGCCGCgGCc -3'
miRNA:   3'- aGUU-CCUGCGGCaGUu-----GGCGGUGaUG- -5'
31218 5' -54.7 NC_006560.1 + 70375 0.66 0.94058
Target:  5'- ---cGGACGCCauggccgacgcgGUgAGCCGgUACUGCg -3'
miRNA:   3'- aguuCCUGCGG------------CAgUUGGCgGUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 23316 0.66 0.94058
Target:  5'- gCGAGaACGCCGccgCGGCCGgCGCcGCg -3'
miRNA:   3'- aGUUCcUGCGGCa--GUUGGCgGUGaUG- -5'
31218 5' -54.7 NC_006560.1 + 70888 0.66 0.94058
Target:  5'- -gGAGGGCcgcuCCGUCcucacgAGCCGCCGCg-- -3'
miRNA:   3'- agUUCCUGc---GGCAG------UUGGCGGUGaug -5'
31218 5' -54.7 NC_006560.1 + 117512 0.66 0.94058
Target:  5'- gUCucGGACGCCuGcCuGGCCGCCuccggggugccGCUACa -3'
miRNA:   3'- -AGuuCCUGCGG-CaG-UUGGCGG-----------UGAUG- -5'
31218 5' -54.7 NC_006560.1 + 113212 0.66 0.94058
Target:  5'- cCGGGGuGCGCU-UCGACCGCguguacgccaCGCUGCa -3'
miRNA:   3'- aGUUCC-UGCGGcAGUUGGCG----------GUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 78281 0.66 0.94058
Target:  5'- gCGAGGACGCCc-CGGCC-CCGCc-- -3'
miRNA:   3'- aGUUCCUGCGGcaGUUGGcGGUGaug -5'
31218 5' -54.7 NC_006560.1 + 46559 0.66 0.935744
Target:  5'- --cGGGGCGCCGUCcgggucgcaGAcccccucccccCCGCCGCggACg -3'
miRNA:   3'- aguUCCUGCGGCAG---------UU-----------GGCGGUGa-UG- -5'
31218 5' -54.7 NC_006560.1 + 17572 0.66 0.935744
Target:  5'- gUCGGGGGCGUcaucguccguguCGUCcuCCGCCccGCUGg -3'
miRNA:   3'- -AGUUCCUGCG------------GCAGuuGGCGG--UGAUg -5'
31218 5' -54.7 NC_006560.1 + 96951 0.66 0.935744
Target:  5'- cUCGAcGGGcCGCCG-C-GCCGCCGCg-- -3'
miRNA:   3'- -AGUU-CCU-GCGGCaGuUGGCGGUGaug -5'
31218 5' -54.7 NC_006560.1 + 35259 0.66 0.935744
Target:  5'- gCGGGGcCGCg--CGGCCGCCGCgccggGCg -3'
miRNA:   3'- aGUUCCuGCGgcaGUUGGCGGUGa----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.