miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31218 5' -54.7 NC_006560.1 + 146072 0.66 0.935744
Target:  5'- cUCGGGGAgGCgGgagCGGCgGgcCCACUGCg -3'
miRNA:   3'- -AGUUCCUgCGgCa--GUUGgC--GGUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 97205 0.66 0.935744
Target:  5'- gCGAGGcccgcgAgGCCGUgGACCGCaucuuccuccggCGCUACa -3'
miRNA:   3'- aGUUCC------UgCGGCAgUUGGCG------------GUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 46559 0.66 0.935744
Target:  5'- --cGGGGCGCCGUCcgggucgcaGAcccccucccccCCGCCGCggACg -3'
miRNA:   3'- aguUCCUGCGGCAG---------UU-----------GGCGGUGa-UG- -5'
31218 5' -54.7 NC_006560.1 + 17572 0.66 0.935744
Target:  5'- gUCGGGGGCGUcaucguccguguCGUCcuCCGCCccGCUGg -3'
miRNA:   3'- -AGUUCCUGCG------------GCAGuuGGCGG--UGAUg -5'
31218 5' -54.7 NC_006560.1 + 35259 0.66 0.935744
Target:  5'- gCGGGGcCGCg--CGGCCGCCGCgccggGCg -3'
miRNA:   3'- aGUUCCuGCGgcaGUUGGCGGUGa----UG- -5'
31218 5' -54.7 NC_006560.1 + 115041 0.66 0.935247
Target:  5'- cUCGGGGaucucgcGCGCCGac-GCCGCggCGCUGCa -3'
miRNA:   3'- -AGUUCC-------UGCGGCaguUGGCG--GUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 75349 0.66 0.934748
Target:  5'- gUCGGGGcgacgcggcggcGCGCCGacgagcuggaggCGGCCGCCGCcgACc -3'
miRNA:   3'- -AGUUCC------------UGCGGCa-----------GUUGGCGGUGa-UG- -5'
31218 5' -54.7 NC_006560.1 + 55828 0.66 0.932726
Target:  5'- -aAGGcGGCGCCGUCGcccggguaguagucgGCgGCCACg-- -3'
miRNA:   3'- agUUC-CUGCGGCAGU---------------UGgCGGUGaug -5'
31218 5' -54.7 NC_006560.1 + 121780 0.66 0.931185
Target:  5'- cUCGAGGcccucgaagaagagcCGCaCGUCGuCCGCCAgCUGCc -3'
miRNA:   3'- -AGUUCCu--------------GCG-GCAGUuGGCGGU-GAUG- -5'
31218 5' -54.7 NC_006560.1 + 54770 0.66 0.930666
Target:  5'- gCGAGGccccACGCCGcgCGgggcACCGCCAggACg -3'
miRNA:   3'- aGUUCC----UGCGGCa-GU----UGGCGGUgaUG- -5'
31218 5' -54.7 NC_006560.1 + 142959 0.66 0.930666
Target:  5'- gCGAGGcgACGCgCGg--GCCGCCGCgGCg -3'
miRNA:   3'- aGUUCC--UGCG-GCaguUGGCGGUGaUG- -5'
31218 5' -54.7 NC_006560.1 + 35196 0.66 0.930666
Target:  5'- cCGGGGGCGCCGgggccCGGgCGCCGa--- -3'
miRNA:   3'- aGUUCCUGCGGCa----GUUgGCGGUgaug -5'
31218 5' -54.7 NC_006560.1 + 59972 0.66 0.930666
Target:  5'- aCAGGGAgGCCaugacgCugcGCUGCCugUGCa -3'
miRNA:   3'- aGUUCCUgCGGca----Gu--UGGCGGugAUG- -5'
31218 5' -54.7 NC_006560.1 + 24395 0.66 0.930666
Target:  5'- cCGAGGACGUgCGcgugcuggugcUCuACgCGCCGCUGCc -3'
miRNA:   3'- aGUUCCUGCG-GC-----------AGuUG-GCGGUGAUG- -5'
31218 5' -54.7 NC_006560.1 + 19808 0.66 0.930666
Target:  5'- gCAGGcGCGCCGcCuGACCGCCccccacCUGCa -3'
miRNA:   3'- aGUUCcUGCGGCaG-UUGGCGGu-----GAUG- -5'
31218 5' -54.7 NC_006560.1 + 119123 0.66 0.930666
Target:  5'- cCGcGGGCGCCGguucguGCCGCCGg-GCg -3'
miRNA:   3'- aGUuCCUGCGGCagu---UGGCGGUgaUG- -5'
31218 5' -54.7 NC_006560.1 + 133196 0.66 0.930145
Target:  5'- gCGGGGcCGCCGUCcagagcgAACCGCaGCcgGCg -3'
miRNA:   3'- aGUUCCuGCGGCAG-------UUGGCGgUGa-UG- -5'
31218 5' -54.7 NC_006560.1 + 50078 0.66 0.925344
Target:  5'- gCGAcGACGCCGcCGGCC-CCGCcgGCg -3'
miRNA:   3'- aGUUcCUGCGGCaGUUGGcGGUGa-UG- -5'
31218 5' -54.7 NC_006560.1 + 138497 0.66 0.925344
Target:  5'- cCGAGGGCgagGCCGgggcGCCGCCccguCUGCc -3'
miRNA:   3'- aGUUCCUG---CGGCagu-UGGCGGu---GAUG- -5'
31218 5' -54.7 NC_006560.1 + 70239 0.66 0.925344
Target:  5'- aUCGAGGACGCgaUCG--UGCUGCUGCg -3'
miRNA:   3'- -AGUUCCUGCGgcAGUugGCGGUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.