Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3122 | 3' | -55.3 | NC_001493.1 | + | 1827 | 1.06 | 0.003525 |
Target: 5'- aGACAGCCACUCCUUGACGGCCACAAUg -3' miRNA: 3'- -CUGUCGGUGAGGAACUGCCGGUGUUA- -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 117381 | 1.06 | 0.003525 |
Target: 5'- aGACAGCCACUCCUUGACGGCCACAAUg -3' miRNA: 3'- -CUGUCGGUGAGGAACUGCCGGUGUUA- -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 90882 | 0.73 | 0.511025 |
Target: 5'- cAUAaCCAC-CCUUGGCGGCCGCGGa -3' miRNA: 3'- cUGUcGGUGaGGAACUGCCGGUGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 35714 | 0.71 | 0.635676 |
Target: 5'- cGAUggGGUCAauCUUCUUGACGGCCAUGAa -3' miRNA: 3'- -CUG--UCGGU--GAGGAACUGCCGGUGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 95863 | 0.69 | 0.698662 |
Target: 5'- uGACgAGCCACUCCau--CGGUCACAc- -3' miRNA: 3'- -CUG-UCGGUGAGGaacuGCCGGUGUua -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 18108 | 0.68 | 0.77892 |
Target: 5'- cACGGCCAUUCCcgUGGCGGacaGCGGg -3' miRNA: 3'- cUGUCGGUGAGGa-ACUGCCgg-UGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 133663 | 0.68 | 0.77892 |
Target: 5'- cACGGCCAUUCCcgUGGCGGacaGCGGg -3' miRNA: 3'- cUGUCGGUGAGGa-ACUGCCgg-UGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 126570 | 0.68 | 0.788428 |
Target: 5'- cGGCGGCuCGCUCUaauaugacGGCGGCCAUggUu -3' miRNA: 3'- -CUGUCG-GUGAGGaa------CUGCCGGUGuuA- -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 11016 | 0.68 | 0.788428 |
Target: 5'- cGGCGGCuCGCUCUaauaugacGGCGGCCAUggUu -3' miRNA: 3'- -CUGUCG-GUGAGGaa------CUGCCGGUGuuA- -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 105850 | 0.67 | 0.842001 |
Target: 5'- ---cGCCguACUCUUUGGUGGCCACGAc -3' miRNA: 3'- cuguCGG--UGAGGAACUGCCGGUGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 124007 | 0.66 | 0.873777 |
Target: 5'- --gAGUCACUCC-UGugGcGCCGCGc- -3' miRNA: 3'- cugUCGGUGAGGaACugC-CGGUGUua -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 8453 | 0.66 | 0.873777 |
Target: 5'- --gAGUCACUCC-UGugGcGCCGCGc- -3' miRNA: 3'- cugUCGGUGAGGaACugC-CGGUGUua -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 62593 | 0.66 | 0.873777 |
Target: 5'- cACGGCCACgggcacggCC---ACGGCCACGGg -3' miRNA: 3'- cUGUCGGUGa-------GGaacUGCCGGUGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 45861 | 0.66 | 0.876759 |
Target: 5'- cGACAGCCuCUCCUcggcgagaUGugcgggcugcgcgagGCGGCCAgAAa -3' miRNA: 3'- -CUGUCGGuGAGGA--------AC---------------UGCCGGUgUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 133719 | 0.66 | 0.895218 |
Target: 5'- aGACGGCCcauUUCCUggacGCGGCCcCGAa -3' miRNA: 3'- -CUGUCGGu--GAGGAac--UGCCGGuGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 55148 | 0.66 | 0.895218 |
Target: 5'- aGCAGCC--UCCUUc-CGGCCGCAGc -3' miRNA: 3'- cUGUCGGugAGGAAcuGCCGGUGUUa -5' |
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3122 | 3' | -55.3 | NC_001493.1 | + | 18165 | 0.66 | 0.895218 |
Target: 5'- aGACGGCCcauUUCCUggacGCGGCCcCGAa -3' miRNA: 3'- -CUGUCGGu--GAGGAac--UGCCGGuGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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