Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3122 | 5' | -53.8 | NC_001493.1 | + | 1861 | 1.1 | 0.003114 |
Target: 5'- cUCAAGGAGGCCGCAAAGAGUAGCCAGa -3' miRNA: 3'- -AGUUCCUCCGGCGUUUCUCAUCGGUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 1988 | 0.69 | 0.809764 |
Target: 5'- aCAuuGuGGCCGuCAAGGAGUGGCUg- -3' miRNA: 3'- aGUucCuCCGGC-GUUUCUCAUCGGuc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 4087 | 0.7 | 0.78176 |
Target: 5'- cUCGAGGAGGuucccaacCCG-AAAGAGUAGCUc- -3' miRNA: 3'- -AGUUCCUCC--------GGCgUUUCUCAUCGGuc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 9148 | 0.72 | 0.638383 |
Target: 5'- cCGGGGAuGGCgGCGAGGGGggaGGCCGu -3' miRNA: 3'- aGUUCCU-CCGgCGUUUCUCa--UCGGUc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 10896 | 0.66 | 0.933291 |
Target: 5'- cCGGGGAGGcCCGUGucGGGUAuCCGa -3' miRNA: 3'- aGUUCCUCC-GGCGUuuCUCAUcGGUc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 19550 | 0.73 | 0.606626 |
Target: 5'- -aGAGGcGGCCGCcgugaagacgAGAGAGcUGGCCAGc -3' miRNA: 3'- agUUCCuCCGGCG----------UUUCUC-AUCGGUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 27865 | 0.73 | 0.617203 |
Target: 5'- gCGAGGAGGagaGCGAAGAG-AGCgAGg -3' miRNA: 3'- aGUUCCUCCgg-CGUUUCUCaUCGgUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 27906 | 0.7 | 0.78176 |
Target: 5'- aCAAGGGGGCgaGaCGGAGAGUggaGGCgAGg -3' miRNA: 3'- aGUUCCUCCGg-C-GUUUCUCA---UCGgUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 29568 | 0.76 | 0.435532 |
Target: 5'- cCAAcGGAGGCCGCugcGAAGGGUGGuCCGc -3' miRNA: 3'- aGUU-CCUCCGGCG---UUUCUCAUC-GGUc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 44173 | 0.66 | 0.936366 |
Target: 5'- -gGGGGAGccgaucaGCCGCAGucAGccgcugagcucaccGGUGGCCAGg -3' miRNA: 3'- agUUCCUC-------CGGCGUU--UC--------------UCAUCGGUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 59525 | 0.69 | 0.836217 |
Target: 5'- aCGcGGuGGCCGgAGAGAccGUGGCCGa -3' miRNA: 3'- aGUuCCuCCGGCgUUUCU--CAUCGGUc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 81244 | 0.66 | 0.945039 |
Target: 5'- aUCGAGGAGGUCGU---GGGUcugcucguguaacagGGCCGc -3' miRNA: 3'- -AGUUCCUCCGGCGuuuCUCA---------------UCGGUc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 95830 | 0.74 | 0.520334 |
Target: 5'- aCAGGGAGGCCGUGAAGAcaucgggguugcucGUgacgAGCCAc -3' miRNA: 3'- aGUUCCUCCGGCGUUUCU--------------CA----UCGGUc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 101953 | 0.66 | 0.927963 |
Target: 5'- -gAGGGGGGUCu----GGGUGGCCAGu -3' miRNA: 3'- agUUCCUCCGGcguuuCUCAUCGGUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 113437 | 0.67 | 0.897497 |
Target: 5'- -gGAGGGGGuuGCcGGGuccGUGGCUGGg -3' miRNA: 3'- agUUCCUCCggCGuUUCu--CAUCGGUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 115704 | 0.68 | 0.844648 |
Target: 5'- cCAAGGGGG-CGUggGG-GUGGCgAGg -3' miRNA: 3'- aGUUCCUCCgGCGuuUCuCAUCGgUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 117415 | 1.1 | 0.003114 |
Target: 5'- cUCAAGGAGGCCGCAAAGAGUAGCCAGa -3' miRNA: 3'- -AGUUCCUCCGGCGUUUCUCAUCGGUC- -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 117542 | 0.69 | 0.809764 |
Target: 5'- aCAuuGuGGCCGuCAAGGAGUGGCUg- -3' miRNA: 3'- aGUucCuCCGGC-GUUUCUCAUCGGuc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 119641 | 0.7 | 0.78176 |
Target: 5'- cUCGAGGAGGuucccaacCCG-AAAGAGUAGCUc- -3' miRNA: 3'- -AGUUCCUCC--------GGCgUUUCUCAUCGGuc -5' |
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3122 | 5' | -53.8 | NC_001493.1 | + | 124703 | 0.72 | 0.638383 |
Target: 5'- cCGGGGAuGGCgGCGAGGGGggaGGCCGu -3' miRNA: 3'- aGUUCCU-CCGgCGUUUCUCa--UCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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