miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31223 5' -58.5 NC_006560.1 + 40092 0.66 0.820046
Target:  5'- -gGGGGCGggGCGCCCgGGC-CGCc- -3'
miRNA:   3'- cgCUCUGCgaCGCGGGgUUGuGCGac -5'
31223 5' -58.5 NC_006560.1 + 146582 0.66 0.820046
Target:  5'- -gGAGGCGCccccgGCGCCCgaGGCcggGCGCUu -3'
miRNA:   3'- cgCUCUGCGa----CGCGGGg-UUG---UGCGAc -5'
31223 5' -58.5 NC_006560.1 + 74574 0.66 0.820046
Target:  5'- uCGGGGgGCUGCggacgGCCCCGGC-CGUccUGg -3'
miRNA:   3'- cGCUCUgCGACG-----CGGGGUUGuGCG--AC- -5'
31223 5' -58.5 NC_006560.1 + 130541 0.66 0.820046
Target:  5'- gGCGccGCGCUGgGCgUgGACGCGCa- -3'
miRNA:   3'- -CGCucUGCGACgCGgGgUUGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 131855 0.66 0.820046
Target:  5'- gGCGGcGACGCggcgcGCGCUgCGGgGCGCg- -3'
miRNA:   3'- -CGCU-CUGCGa----CGCGGgGUUgUGCGac -5'
31223 5' -58.5 NC_006560.1 + 117980 0.66 0.820046
Target:  5'- gGCGccuGGGCGCggcgGCGCCCgCGGCG-GCg- -3'
miRNA:   3'- -CGC---UCUGCGa---CGCGGG-GUUGUgCGac -5'
31223 5' -58.5 NC_006560.1 + 45480 0.66 0.820046
Target:  5'- cGCGAGuucaGCgacgaGCGUCCCAGgACGUa- -3'
miRNA:   3'- -CGCUCug--CGa----CGCGGGGUUgUGCGac -5'
31223 5' -58.5 NC_006560.1 + 4678 0.66 0.820046
Target:  5'- cCGuGGCGUcGCGCCCggccacggCGGCGCGCg- -3'
miRNA:   3'- cGCuCUGCGaCGCGGG--------GUUGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 45254 0.66 0.820046
Target:  5'- gGCGucuguGGCGCgugcgggggagGUGCCCCGgggguACGCGCg- -3'
miRNA:   3'- -CGCu----CUGCGa----------CGCGGGGU-----UGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 95172 0.66 0.820046
Target:  5'- cUGGGGCGCUGCGUgCgCGAgcaGCGCg- -3'
miRNA:   3'- cGCUCUGCGACGCGgG-GUUg--UGCGac -5'
31223 5' -58.5 NC_006560.1 + 55328 0.66 0.814943
Target:  5'- cGCGGGGCGggggcucguggcggcCgugGUGCUCCAGCACGggGa -3'
miRNA:   3'- -CGCUCUGC---------------Ga--CGCGGGGUUGUGCgaC- -5'
31223 5' -58.5 NC_006560.1 + 62880 0.66 0.811509
Target:  5'- uUGGGGCGCaGCGUCUCGccguCGCGCg- -3'
miRNA:   3'- cGCUCUGCGaCGCGGGGUu---GUGCGac -5'
31223 5' -58.5 NC_006560.1 + 15423 0.66 0.811509
Target:  5'- aGC-AGGCcccggGCgGCGCgCCCGGCGCGCg- -3'
miRNA:   3'- -CGcUCUG-----CGaCGCG-GGGUUGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 76514 0.66 0.811509
Target:  5'- cGCGcGGCGCgucuucgggGCGCaCCCGcugaccgccGCGCGCg- -3'
miRNA:   3'- -CGCuCUGCGa--------CGCG-GGGU---------UGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 95733 0.66 0.811509
Target:  5'- uGCGGGGaaguggaGCUGCgccGCCCCGACuacgguCGCc- -3'
miRNA:   3'- -CGCUCUg------CGACG---CGGGGUUGu-----GCGac -5'
31223 5' -58.5 NC_006560.1 + 23336 0.66 0.811509
Target:  5'- gGCGccGCGCcGcCGCCCCGGgACGCc- -3'
miRNA:   3'- -CGCucUGCGaC-GCGGGGUUgUGCGac -5'
31223 5' -58.5 NC_006560.1 + 22661 0.66 0.811509
Target:  5'- cGCcGGGCGCagcgaGCGCCgCCGcGCGCGCg- -3'
miRNA:   3'- -CGcUCUGCGa----CGCGG-GGU-UGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 146508 0.66 0.810646
Target:  5'- gGgGGGA-GCUGCGCCgggcgggCCGGCGCGUc- -3'
miRNA:   3'- -CgCUCUgCGACGCGG-------GGUUGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 51946 0.66 0.802814
Target:  5'- -gGAGGCgGCcGCGCUCCGggcGCACGUg- -3'
miRNA:   3'- cgCUCUG-CGaCGCGGGGU---UGUGCGac -5'
31223 5' -58.5 NC_006560.1 + 73700 0.66 0.802814
Target:  5'- gGCG-GugGCgGC-CCCCGAgGCGCc- -3'
miRNA:   3'- -CGCuCugCGaCGcGGGGUUgUGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.